Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2806

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11173 and 11174 are separated by 168 nucleotides mRNA_2805: 11173 - KOG0128 RNA-binding protein SART3 (RRM superfamily), at 259,286 to 263,641 11173 mRNA_2806: 11174 - Hypothetical Protein, at 263,810 to 265,112 11174

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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263,764 - +2.0
264,265 - 11174 mRNA_2806 0.35 -0.8
264,286 - 11174 mRNA_2806 0.37 +2.7
264,300 - 11174 mRNA_2806 0.38 -0.0
264,335 + 11174 mRNA_2806 0.40 +0.4
264,346 + 11174 mRNA_2806 0.41 -0.1
264,348 - 11174 mRNA_2806 0.41 -0.1
264,476 + 11174 mRNA_2806 0.51 -0.8
264,577 - 11174 mRNA_2806 0.59 +0.7
264,733 - 11174 mRNA_2806 0.71 -0.9
264,795 + 11174 mRNA_2806 0.76 +1.2
265,952 + +0.2
266,107 - -0.8

Or see this region's nucleotide sequence