Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2825

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11193 and 11194 are separated by 233 nucleotides mRNA_2825: 11193 - HMMPfam-F-box-like-PF12937, at 306,880 to 308,238 11193 mRNA_2826: 11194 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 308,472 to 309,591 11194

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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306,149 + -0.7
306,422 - -0.2
306,435 + -0.1
306,453 - -0.2
306,459 - +0.3
306,464 + +0.7
306,472 + -0.5
306,602 - +0.3
306,616 - +0.0
306,617 - -0.0
306,620 + +0.6
306,633 - +1.3
306,678 + +0.1
306,683 + +3.2
306,686 - +0.3
306,726 - +0.8
306,750 + +1.1
306,912 + +0.3
306,981 - +0.3
307,039 - 11193 mRNA_2825 0.12 +0.4
307,057 - 11193 mRNA_2825 0.13 -0.1
307,061 - 11193 mRNA_2825 0.13 -1.2
307,126 - 11193 mRNA_2825 0.18 +1.7
307,469 + 11193 mRNA_2825 0.43 +2.5
307,908 - 11193 mRNA_2825 0.76 -1.9
307,921 - 11193 mRNA_2825 0.77 +1.1
307,924 - 11193 mRNA_2825 0.77 +1.4
307,927 - 11193 mRNA_2825 0.77 -2.8
307,950 + 11193 mRNA_2825 0.79 -0.7
308,070 - 11193 mRNA_2825 0.88 +0.5
308,071 + 11193 mRNA_2825 0.88 +0.1
308,083 + 11193 mRNA_2825 0.89 -0.4
308,088 - 11193 mRNA_2825 0.89 +1.1
308,091 - 11193 mRNA_2825 0.89 -0.8
308,091 + 11193 mRNA_2825 0.89 +0.3
308,198 - +0.0
308,198 - -0.0
308,203 - -0.3
308,209 + -1.4
308,209 + -0.6
308,212 - -0.9
308,213 + +0.6
308,216 + +0.0
308,232 + +1.4
308,245 - -0.9
308,261 - -0.3
308,262 + +1.0
308,359 + +0.6
308,372 + +0.6
308,388 + +1.9
308,395 + +0.4
308,401 + -1.0
308,417 - -1.5
308,418 - -0.8
308,418 + -0.9
308,424 - +2.8
308,431 - -0.6
308,535 + -0.7
308,557 - +1.0
308,569 + -0.0
308,579 + -0.3
308,582 - +2.9
308,583 - -1.1
308,586 - 11194 mRNA_2826 0.10 -0.5
308,589 - 11194 mRNA_2826 0.10 -0.1
308,708 + 11194 mRNA_2826 0.21 -1.3
308,725 - 11194 mRNA_2826 0.23 +1.1
308,870 + 11194 mRNA_2826 0.36 -0.3
308,997 + 11194 mRNA_2826 0.47 +1.0
309,058 + 11194 mRNA_2826 0.52 -0.5
309,177 - 11194 mRNA_2826 0.63 +2.5

Or see this region's nucleotide sequence