Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2849

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11217 and 11218 are separated by 300 nucleotides mRNA_2849: 11217 - K01611 speD, AMD1 S-adenosylmethionine decarboxylase, at 358,278 to 359,885 11217 mRNA_2850: 11218 - SUPERFAMILY--SSF52047, at 360,186 to 362,999 11218

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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357,326 + +0.2
357,408 - +0.6
357,426 + -0.9
357,603 - -0.7
357,713 + -0.5
357,876 + -0.9
357,930 + +2.0
357,993 - -0.1
358,020 - -1.3
358,025 - +0.6
358,037 + +0.6
358,044 - -2.5
358,055 - -2.0
358,188 + -0.7
359,740 + +0.1
360,076 - -0.2
360,085 - -0.9
360,112 - -0.5
360,248 + -0.4
360,269 - +0.0
360,521 - 11218 mRNA_2850 0.12 -1.0
360,802 - 11218 mRNA_2850 0.22 +0.2
360,873 - 11218 mRNA_2850 0.24 +0.2

Or see this region's nucleotide sequence