Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2886

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11253 and 11254 are separated by 348 nucleotides11254 and 11255 are separated by 230 nucleotides mRNA_2885: 11253 - K20246 EGT1 L-histidine Nalpha-methyltransferase / hercynylcysteine S-oxide synthase, at 452,122 to 455,835 11253 mRNA_2886: 11254 - Hypothetical Protein, at 456,184 to 458,722 11254 mRNA_2887: 11255 - K07442 TRM61, GCD14 tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit, at 458,953 to 460,669 11255

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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455,619 + -0.2
455,622 + +0.4
455,749 - +0.4
455,749 - +0.5
455,766 + -1.1
455,883 - +0.4
455,891 - +0.8
455,900 + +0.5
455,905 - +0.3
455,906 + +1.0
455,911 + -1.1
455,924 + -0.8
455,935 + -0.3
455,943 - +0.4
455,945 - +0.8
455,946 + +1.0
456,078 - -0.8
456,096 - -1.2
456,118 - -0.8
456,118 - +0.8
456,150 + -1.8
456,191 - +0.4
456,267 + -0.1
456,287 - -2.3
456,626 - 11254 mRNA_2886 0.17 +0.9
457,154 + 11254 mRNA_2886 0.38 -0.2
457,466 + 11254 mRNA_2886 0.50 +0.0
457,593 + 11254 mRNA_2886 0.55 +0.9
457,646 - 11254 mRNA_2886 0.58 -0.9
457,973 + 11254 mRNA_2886 0.70 -0.7
458,260 + 11254 mRNA_2886 0.82 +0.1
458,423 + 11254 mRNA_2886 0.88 +1.7
458,528 - +1.3
458,563 + +1.0
458,698 + -1.6
458,729 - +0.3
458,845 + -0.2
458,851 + -0.4
458,859 + +0.3
458,868 + +0.7
458,902 + +0.4
458,944 + -0.2
458,950 - +1.6

Or see this region's nucleotide sequence