Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2930

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11297 and 11298 are separated by 475 nucleotides11298 and 11299 are separated by 313 nucleotides mRNA_2929: 11297 - Hypothetical Protein, at 576,993 to 577,700 11297 mRNA_2930: 11298 - Interpro Nbl1 / Borealin N terminal, at 578,176 to 578,978 11298 mRNA_2931: 11299 - K06676 BRRN1, BRN1, CAPH condensin complex subunit 2, at 579,292 to 582,332 11299

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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577,194 + 11297 mRNA_2929 0.28 -1.7
579,033 + +1.1
579,197 - +0.2
579,205 - +0.1
579,214 + -0.2

Or see this region's nucleotide sequence