Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2955

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11323 and 11324 are separated by 136 nucleotides mRNA_2955: 11323 - Hypothetical Protein, at 642,849 to 643,772 11323 mRNA_2956: 11324 - Hypothetical Protein, at 643,909 to 644,877 11324

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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641,952 + -0.7
641,987 + -0.2
642,058 - +2.0
642,066 - +0.7
642,108 + +0.1
642,177 - -0.1
642,603 + -0.2
642,624 + +0.6
642,627 - +1.3
643,099 + 11323 mRNA_2955 0.27 -0.7
643,261 + 11323 mRNA_2955 0.45 -0.4
643,267 - 11323 mRNA_2955 0.45 -0.9
643,532 - 11323 mRNA_2955 0.74 -0.0
643,545 - 11323 mRNA_2955 0.75 +1.5
643,560 - 11323 mRNA_2955 0.77 -0.6
643,579 + 11323 mRNA_2955 0.79 +0.1
643,580 - 11323 mRNA_2955 0.79 -1.6
643,589 - 11323 mRNA_2955 0.80 +0.2
643,618 - 11323 mRNA_2955 0.83 -2.4
643,646 + 11323 mRNA_2955 0.86 +0.4
643,647 - 11323 mRNA_2955 0.86 +0.3
643,658 - 11323 mRNA_2955 0.88 -0.0
643,662 - 11323 mRNA_2955 0.88 -0.3
643,663 + 11323 mRNA_2955 0.88 +0.1
643,672 - 11323 mRNA_2955 0.89 -0.3
643,679 + 11323 mRNA_2955 0.90 +1.5
643,684 - -1.0
643,690 - +1.6
643,693 - +1.8
643,709 - -1.4
643,710 - +0.1
643,716 + -2.6
643,718 + -0.6
643,757 + +1.1
643,759 + +0.8
643,763 - -1.4
643,763 - +0.2
643,763 + -0.4
643,770 - -0.3
643,770 - -0.9
643,778 - +0.0
643,783 + +2.3
643,786 - -0.5
643,791 + +0.9
643,793 + +0.9
643,801 + -0.8
643,892 - +0.4
643,898 + -1.0
643,898 - -0.4
643,912 - +1.2
643,917 - -0.4
643,988 - -0.2
644,033 - 11324 mRNA_2956 0.13 -2.4
644,036 + 11324 mRNA_2956 0.13 -0.6
644,046 - 11324 mRNA_2956 0.14 +0.4
644,050 - 11324 mRNA_2956 0.15 +0.3
644,055 + 11324 mRNA_2956 0.15 -0.8
644,073 - 11324 mRNA_2956 0.17 +0.4
644,076 + 11324 mRNA_2956 0.17 +0.7
644,078 - 11324 mRNA_2956 0.17 +0.8
644,079 - 11324 mRNA_2956 0.18 +0.2
644,081 - 11324 mRNA_2956 0.18 +0.1
644,084 - 11324 mRNA_2956 0.18 +0.6
644,091 + 11324 mRNA_2956 0.19 +0.3
644,091 - 11324 mRNA_2956 0.19 +1.0
644,103 + 11324 mRNA_2956 0.20 +0.4
644,104 - 11324 mRNA_2956 0.20 +0.4
644,109 + 11324 mRNA_2956 0.21 -1.1
644,112 + 11324 mRNA_2956 0.21 +0.6
644,117 + 11324 mRNA_2956 0.21 +0.1
644,121 + 11324 mRNA_2956 0.22 +0.3
644,131 - 11324 mRNA_2956 0.23 -2.1
644,132 + 11324 mRNA_2956 0.23 -1.4
644,134 + 11324 mRNA_2956 0.23 -0.6
644,277 - 11324 mRNA_2956 0.38 -0.6
644,289 - 11324 mRNA_2956 0.39 -0.1
644,305 - 11324 mRNA_2956 0.41 -0.7
644,472 - 11324 mRNA_2956 0.58 -0.5
644,556 + 11324 mRNA_2956 0.67 +1.3
644,582 + 11324 mRNA_2956 0.69 -1.7
644,697 - 11324 mRNA_2956 0.81 -0.9
644,724 - 11324 mRNA_2956 0.84 -0.1
644,732 + 11324 mRNA_2956 0.85 +0.1

Or see this region's nucleotide sequence