Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2971

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11338 and 11339 are separated by 80 nucleotides11339 and 11340 are separated by 269 nucleotides mRNA_2970: 11338 - K00219 fadH 2,4-dienoyl-CoA reductase (NADPH2), at 682,650 to 684,031 11338 mRNA_2971: 11339 - HMMPfam-Anp1-PF03452,SUPERFAMILY--SSF53448, at 684,112 to 685,866 11339 mRNA_2972: 11340 - K03850 ALG10 alpha-1,2-glucosyltransferase, at 686,136 to 688,131 11340

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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683,199 - 11338 mRNA_2970 0.40 -0.5
683,290 + 11338 mRNA_2970 0.46 -0.8
683,293 - 11338 mRNA_2970 0.47 +1.1
683,302 + 11338 mRNA_2970 0.47 +0.8
683,322 - 11338 mRNA_2970 0.49 -1.7
683,407 - 11338 mRNA_2970 0.55 -0.6
683,407 - 11338 mRNA_2970 0.55 +0.2
683,408 - 11338 mRNA_2970 0.55 +1.3
683,421 + 11338 mRNA_2970 0.56 -0.2
683,429 - 11338 mRNA_2970 0.56 +2.1
683,595 - 11338 mRNA_2970 0.68 -0.6
683,752 + 11338 mRNA_2970 0.80 +0.4
683,787 + 11338 mRNA_2970 0.82 +1.0
683,795 - 11338 mRNA_2970 0.83 +0.8
683,798 + 11338 mRNA_2970 0.83 -0.1
683,844 - 11338 mRNA_2970 0.86 +0.1
683,862 + 11338 mRNA_2970 0.88 +0.8
683,865 - 11338 mRNA_2970 0.88 +0.7
683,896 - +1.3
684,027 - +0.4
684,083 + -1.6
684,294 - 11339 mRNA_2971 0.10 +0.8
684,354 + 11339 mRNA_2971 0.14 +2.4
684,498 + 11339 mRNA_2971 0.22 +2.4
684,604 + 11339 mRNA_2971 0.28 +0.1
684,633 + 11339 mRNA_2971 0.30 +0.1
684,642 - 11339 mRNA_2971 0.30 +1.3
684,653 - 11339 mRNA_2971 0.31 -0.3
684,673 + 11339 mRNA_2971 0.32 +0.3
684,778 + 11339 mRNA_2971 0.38 +0.9
684,788 - 11339 mRNA_2971 0.39 -0.7
684,816 - 11339 mRNA_2971 0.40 +0.8
684,816 - 11339 mRNA_2971 0.40 +0.5
684,819 + 11339 mRNA_2971 0.40 +1.4
684,926 + 11339 mRNA_2971 0.46 +1.4
684,968 - 11339 mRNA_2971 0.49 +1.0
685,026 - 11339 mRNA_2971 0.52 +0.6
685,026 - 11339 mRNA_2971 0.52 +1.2
685,029 - 11339 mRNA_2971 0.52 +3.6
685,174 - 11339 mRNA_2971 0.61 +0.3
685,357 - 11339 mRNA_2971 0.71 +2.1
685,368 + 11339 mRNA_2971 0.72 -0.0
685,374 - 11339 mRNA_2971 0.72 +2.9
685,392 + 11339 mRNA_2971 0.73 +0.9
685,496 - 11339 mRNA_2971 0.79 +1.3
685,536 + 11339 mRNA_2971 0.81 +2.2
685,597 + 11339 mRNA_2971 0.85 +2.5
685,598 + 11339 mRNA_2971 0.85 -1.9
685,599 - 11339 mRNA_2971 0.85 +1.3
685,601 - 11339 mRNA_2971 0.85 +1.9
685,601 - 11339 mRNA_2971 0.85 +2.5
685,641 - 11339 mRNA_2971 0.87 +2.4
685,687 - 11339 mRNA_2971 0.90 +1.2
685,688 - 11339 mRNA_2971 0.90 +1.3
685,697 - +1.4
685,756 - -3.4
685,778 + +1.3
685,785 + +0.9
685,801 - +1.3
685,812 + +1.8
685,854 + +0.8
685,905 - -1.3
685,958 + -0.2
685,967 + +0.6
685,974 - +0.4
686,118 - -0.8
686,119 - +0.7
686,164 + -0.9
686,164 + +1.7
686,218 - -1.4
686,221 - -0.2
686,281 - -1.5
686,286 + -0.4
686,460 + 11340 mRNA_2972 0.16 +0.1
686,503 - 11340 mRNA_2972 0.18 +0.0
686,542 + 11340 mRNA_2972 0.20 +0.3
686,744 - 11340 mRNA_2972 0.30 +1.8

Or see this region's nucleotide sequence