Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3007

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11374 and 11375 are separated by 269 nucleotides11375 and 11376 are separated by 250 nucleotides mRNA_3006: 11374 - K03259 EIF4E translation initiation factor 4E, at 56,733 to 57,511 11374 mRNA_3007: 11375 - K15119 SLC25A39_40 solute carrier family 25, member 39/40, at 57,781 to 59,867 11375 mRNA_3008: 11376 - HMMPfam-Inositol hexakisphosphate-PF14566,SUPERFAMILY--SSF52799, at 60,118 to 65,560 11376

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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56,876 + 11374 mRNA_3006 0.18 -0.1
56,979 + 11374 mRNA_3006 0.32 +0.0
57,117 - 11374 mRNA_3006 0.49 +0.5
57,261 + 11374 mRNA_3006 0.68 +1.6
57,408 - 11374 mRNA_3006 0.87 +1.3
57,414 + 11374 mRNA_3006 0.87 -0.5
57,416 - 11374 mRNA_3006 0.88 -0.1
57,551 + +0.1
57,591 - -1.7
57,699 - +1.3
57,718 - -0.4
57,721 + +0.1
57,763 - +0.3
57,848 + -0.4
60,035 + +0.1
60,203 + +0.5
60,230 + +0.4
60,334 - -0.1
60,402 - -0.4
60,806 - 11376 mRNA_3008 0.13 +2.2
60,810 + 11376 mRNA_3008 0.13 +1.1
60,859 - 11376 mRNA_3008 0.14 +0.0

Or see this region's nucleotide sequence