Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3048

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11415 and 11416 are separated by 393 nucleotides11416 and 11417 are separated by 285 nucleotides mRNA_3047: 11415 - K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7, at 186,454 to 188,264 11415 mRNA_3048: 11416 - K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7, at 188,658 to 190,471 11416 mRNA_3049: 11417 - SUPERFAMILY--SSF50685, at 190,757 to 193,605 11417

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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188,007 + 11415 mRNA_3047 0.86 +2.8
188,028 + 11415 mRNA_3047 0.87 -1.5
188,031 - 11415 mRNA_3047 0.87 -1.2
188,130 - +0.2
188,134 - -1.0
188,239 + +0.2
188,275 + -0.2
188,310 + +0.5
188,315 + -1.1
188,424 + -0.0
188,445 + -0.2
188,553 + +1.0
188,555 - +0.9
188,556 - +0.9
188,564 + +0.7
188,571 - +0.0
188,572 + +0.4
188,576 + +0.6
188,583 - +0.8
188,584 + -0.1
188,598 + +1.9
188,615 + +0.5
188,917 + 11416 mRNA_3048 0.14 +1.7
189,041 + 11416 mRNA_3048 0.21 +0.2
189,058 - 11416 mRNA_3048 0.22 +0.5
189,073 - 11416 mRNA_3048 0.23 +0.9
189,075 + 11416 mRNA_3048 0.23 -0.0
189,109 + 11416 mRNA_3048 0.25 +0.2
189,111 - 11416 mRNA_3048 0.25 +0.6
189,122 + 11416 mRNA_3048 0.26 +0.4
189,125 + 11416 mRNA_3048 0.26 -0.6
189,127 - 11416 mRNA_3048 0.26 +0.4
189,130 - 11416 mRNA_3048 0.26 -0.7
189,139 - 11416 mRNA_3048 0.27 +1.6
189,145 - 11416 mRNA_3048 0.27 -1.0
189,151 - 11416 mRNA_3048 0.27 +0.2
189,153 - 11416 mRNA_3048 0.27 -0.6
189,156 - 11416 mRNA_3048 0.27 +0.6
189,157 + 11416 mRNA_3048 0.28 -0.2
189,157 + 11416 mRNA_3048 0.28 +0.7
189,158 - 11416 mRNA_3048 0.28 +0.2
189,165 + 11416 mRNA_3048 0.28 +1.4
189,166 + 11416 mRNA_3048 0.28 -0.9
189,173 + 11416 mRNA_3048 0.28 -1.0
189,179 + 11416 mRNA_3048 0.29 -1.9
189,202 + 11416 mRNA_3048 0.30 +0.8
189,205 - 11416 mRNA_3048 0.30 +1.4
189,206 - 11416 mRNA_3048 0.30 -0.6
189,228 - 11416 mRNA_3048 0.31 -0.6
189,239 + 11416 mRNA_3048 0.32 -0.3
189,246 + 11416 mRNA_3048 0.32 -0.5
189,281 - 11416 mRNA_3048 0.34 +0.1
189,357 + 11416 mRNA_3048 0.39 +0.1
189,360 + 11416 mRNA_3048 0.39 +0.6
189,381 + 11416 mRNA_3048 0.40 +0.9
189,471 + 11416 mRNA_3048 0.45 -2.0
189,474 + 11416 mRNA_3048 0.45 +0.4
189,590 - 11416 mRNA_3048 0.51 +0.7
189,618 - 11416 mRNA_3048 0.53 -0.1
189,898 - 11416 mRNA_3048 0.68 -0.0
189,915 - 11416 mRNA_3048 0.69 +0.0
190,044 + 11416 mRNA_3048 0.76 -0.4
190,076 + 11416 mRNA_3048 0.78 -1.4
190,096 - 11416 mRNA_3048 0.79 -0.3
190,388 - +0.6
190,390 - +0.6
190,585 - -0.3

Or see this region's nucleotide sequence