Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3058

Experiment: YNB Ricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11425 and 11426 are separated by 300 nucleotides mRNA_3057: 11425 - K02216 CHK1 serine/threonine-protein kinase Chk1, at 212,271 to 214,660 11425 mRNA_3058: 11426 - Hypothetical Protein, at 214,961 to 216,563 11426

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
remove
213,989 - 11425 mRNA_3057 0.72 +0.3
213,994 + 11425 mRNA_3057 0.72 +0.1
214,072 + 11425 mRNA_3057 0.75 +1.6
214,224 - 11425 mRNA_3057 0.82 -0.6
214,238 - 11425 mRNA_3057 0.82 +0.0
214,243 + 11425 mRNA_3057 0.83 -0.2
214,523 + -1.2
214,665 + -2.7
214,696 + +0.1
214,932 + -1.6
214,987 + -1.9
214,988 + +1.1
215,019 + -0.8
215,262 - 11426 mRNA_3058 0.19 -0.5
215,363 - 11426 mRNA_3058 0.25 -0.8
215,509 + 11426 mRNA_3058 0.34 +1.7
215,589 - 11426 mRNA_3058 0.39 -0.2
215,589 - 11426 mRNA_3058 0.39 +1.0
215,589 - 11426 mRNA_3058 0.39 +0.6
215,589 - 11426 mRNA_3058 0.39 -0.9
215,595 + 11426 mRNA_3058 0.40 +1.8
215,643 + 11426 mRNA_3058 0.43 +0.0
215,766 + 11426 mRNA_3058 0.50 +1.5
215,766 - 11426 mRNA_3058 0.50 -0.4
215,839 - 11426 mRNA_3058 0.55 -0.1
215,842 - 11426 mRNA_3058 0.55 -1.5
215,866 + 11426 mRNA_3058 0.56 +0.9
215,905 - 11426 mRNA_3058 0.59 +0.9
216,117 + 11426 mRNA_3058 0.72 +0.4
216,133 - 11426 mRNA_3058 0.73 -0.2
216,179 - 11426 mRNA_3058 0.76 +0.4
216,189 - 11426 mRNA_3058 0.77 +0.3
216,191 - 11426 mRNA_3058 0.77 -1.1
216,234 - 11426 mRNA_3058 0.79 +0.5
216,271 - 11426 mRNA_3058 0.82 -1.0
216,345 - 11426 mRNA_3058 0.86 +0.1
216,395 - 11426 mRNA_3058 0.89 -1.2
216,443 + +0.1
216,446 - +1.3
216,449 + +0.6
216,569 + +0.9
216,570 + +0.3
216,674 + +1.2
216,742 + +0.2
216,837 - +2.7
216,865 - -4.9
216,868 - -0.4
216,879 + -4.5
216,882 + +0.2
216,884 - -0.1
217,004 + -1.8
217,009 - -0.5
217,011 - -1.0
217,029 - -0.6
217,032 + -0.6
217,035 - -0.6
217,037 + -0.3
217,038 + -0.2
217,045 - +2.3
217,152 - -0.3
217,173 + -2.4
217,193 + +0.2
217,252 - -1.2
217,317 + +0.5
217,461 - -1.6
217,464 + -1.1
217,470 - +0.0
217,470 - +0.3
217,475 + +1.3

Or see this region's nucleotide sequence