Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3059

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11427 and 11428 are separated by 499 nucleotides mRNA_3059: 11427 - Hypothetical Protein, at 217,589 to 219,191 11427 mRNA_3060: 11428 - K13115 CCDC130 coiled-coil domain-containing protein 130, at 219,691 to 221,317 11428

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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216,674 + +1.2
216,742 + +0.2
216,837 - +2.7
216,865 - -4.9
216,868 - -0.4
216,879 + -4.5
216,882 + +0.2
216,884 - -0.1
217,004 + -1.8
217,009 - -0.5
217,011 - -1.0
217,029 - -0.6
217,032 + -0.6
217,035 - -0.6
217,037 + -0.3
217,038 + -0.2
217,045 - +2.3
217,152 - -0.3
217,173 + -2.4
217,193 + +0.2
217,252 - -1.2
217,317 + +0.5
217,461 - -1.6
217,464 + -1.1
217,470 - +0.0
217,470 - +0.3
217,475 + +1.3
217,636 + +1.6
217,909 + 11427 mRNA_3059 0.20 -1.1
217,927 - 11427 mRNA_3059 0.21 +1.1
218,062 + 11427 mRNA_3059 0.30 -0.4
218,066 + 11427 mRNA_3059 0.30 -0.8
218,147 - 11427 mRNA_3059 0.35 +0.2
218,168 + 11427 mRNA_3059 0.36 -0.2
218,203 - 11427 mRNA_3059 0.38 +1.3
218,447 - 11427 mRNA_3059 0.54 -0.4
218,618 + 11427 mRNA_3059 0.64 +0.3
218,635 - 11427 mRNA_3059 0.65 -0.6
218,649 + 11427 mRNA_3059 0.66 +0.4
218,747 + 11427 mRNA_3059 0.72 +0.3
218,798 - 11427 mRNA_3059 0.75 -0.1
218,892 - 11427 mRNA_3059 0.81 +0.1
218,996 + 11427 mRNA_3059 0.88 -1.8
219,037 + -0.2
219,182 - +0.9
219,183 - -0.8
219,309 - -0.2
219,330 - -2.3
219,331 - +0.0
219,346 - -0.4
219,346 - +0.8
219,347 + -0.0
219,451 - +0.4
219,453 + -0.7
219,467 - -1.2
219,484 - +1.2
219,501 - -1.0
219,513 + +1.0
219,624 - +0.0
219,630 + -1.3
219,630 + +0.9
219,637 + -1.1
219,639 + +1.0
219,753 - +0.5
219,759 - -0.2
219,763 + +0.7
219,765 - +2.0
219,768 - -0.2
219,773 + -1.1
219,780 - -0.8
219,902 - 11428 mRNA_3060 0.13 +1.2
219,902 - 11428 mRNA_3060 0.13 +0.2
219,903 + 11428 mRNA_3060 0.13 +0.5
219,908 + 11428 mRNA_3060 0.13 +0.5
219,931 + 11428 mRNA_3060 0.15 +0.4
220,038 - 11428 mRNA_3060 0.21 -0.1
220,082 + 11428 mRNA_3060 0.24 +1.3

Or see this region's nucleotide sequence