Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3067

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11435 and 11436 are separated by 303 nucleotides mRNA_3067: 11435 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 235,279 to 236,676 11435 mRNA_3068: 11436 - K02434 gatB, PET112 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B, at 236,980 to 239,400 11436

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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234,314 + -0.7
234,413 - -0.1
234,424 - +1.9
234,453 - -0.3
234,455 - +0.2
234,591 + +0.3
234,722 - +0.6
234,745 + -0.2
234,865 + -0.0
234,875 - -0.1
234,880 - +0.1
234,890 + +0.1
234,992 + +0.9
234,993 + +0.3
235,013 - -0.5
235,017 - -0.3
235,055 + +2.9
235,060 - -0.7
235,067 - -0.6
235,070 + -0.3
235,075 - -1.1
235,078 + -0.8
235,082 - +0.2
235,086 - -0.2
235,087 + -0.2
235,088 + -0.4
235,089 + +0.5
235,095 + -0.7
235,098 + +0.4
235,098 + -0.2
235,098 - -0.5
235,099 - -0.8
235,101 + -0.4
235,101 + +0.0
235,113 - +0.1
235,214 + +0.3
235,231 - -0.9
235,231 - +1.0
235,234 + +0.8
235,239 + -3.1
235,251 + -0.5
235,259 - +0.7
235,301 + +0.7
235,348 - -0.0
235,359 + +0.3
235,361 - +0.2
235,362 - +0.7
235,365 + +0.4
235,379 - +0.3
235,389 - -0.3
235,403 - -0.5
235,405 - -0.2
235,410 - -2.0
235,421 + 11435 mRNA_3067 0.10 -0.2
235,430 - 11435 mRNA_3067 0.11 +0.0
235,580 + 11435 mRNA_3067 0.22 +1.1
235,595 + 11435 mRNA_3067 0.23 -0.1
235,692 - 11435 mRNA_3067 0.30 -0.5
235,714 - 11435 mRNA_3067 0.31 -1.3
235,749 + 11435 mRNA_3067 0.34 +0.2
235,753 - 11435 mRNA_3067 0.34 -0.1
235,987 - 11435 mRNA_3067 0.51 -0.2
236,002 - 11435 mRNA_3067 0.52 -1.1
236,005 + 11435 mRNA_3067 0.52 -1.0
236,525 - 11435 mRNA_3067 0.89 -0.9
236,631 - +0.7
236,681 - +3.1
236,692 - -0.6
236,706 + +0.5
236,726 - -1.1
236,848 - -0.1
236,853 + -0.2
236,971 - -1.2
236,973 + +0.3
236,975 - +0.6
237,304 - 11436 mRNA_3068 0.13 +1.6
237,434 - 11436 mRNA_3068 0.19 -0.3
237,434 + 11436 mRNA_3068 0.19 -0.2
237,438 - 11436 mRNA_3068 0.19 -0.4
237,544 - 11436 mRNA_3068 0.23 +0.6
237,574 - 11436 mRNA_3068 0.25 -0.3

Or see this region's nucleotide sequence