Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3082

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11449 and 11450 are separated by 386 nucleotides mRNA_3081: 11449 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 274,779 to 278,054 11449 mRNA_3082: 11450 - K09510 DNAJB4 DnaJ homolog subfamily B member 4, at 278,441 to 278,932 11450

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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277,595 + 11449 mRNA_3081 0.86 -0.7
277,644 + 11449 mRNA_3081 0.87 +0.5
277,673 + 11449 mRNA_3081 0.88 +0.4
277,681 - 11449 mRNA_3081 0.89 -0.2
277,797 + +0.3
277,797 - +0.2
277,824 + +1.0
277,835 - -0.6
277,836 + -0.9
277,842 + +0.6
277,933 - -1.5
277,960 - -1.2
277,981 + -2.6
277,985 + +0.8
278,083 - +0.0
278,105 - -0.0
278,108 + +0.9
278,135 - +3.2
278,138 + -0.5
278,246 - -0.2
278,263 - -0.1
278,264 - -1.5
278,293 + -0.4
278,402 + +0.9
278,557 - 11450 mRNA_3082 0.24 +0.2
278,558 - 11450 mRNA_3082 0.24 -0.6
278,565 + 11450 mRNA_3082 0.25 +0.1
278,568 - 11450 mRNA_3082 0.26 -0.5
278,704 + 11450 mRNA_3082 0.53 -1.8
278,871 + 11450 mRNA_3082 0.87 +0.2
278,986 - -0.0
278,990 - -0.3
279,127 - +2.1
279,146 + +0.5
279,147 + +0.7
279,149 + -1.4
279,160 + -1.3
279,335 + -0.6
279,423 + +0.0
279,427 + -0.1
279,433 - -0.0
279,447 - -0.1
279,452 + -0.1
279,458 + +0.0
279,482 + -1.6
279,566 - +0.6
279,570 + +0.7
279,573 + -0.2
279,577 + +0.4
279,579 - -0.6
279,596 - +0.0
279,600 + +0.0
279,611 + -0.1
279,629 + +1.1
279,696 + -0.5
279,703 + -0.5
279,735 + +0.3
279,741 + +0.4
279,749 - -0.6
279,754 - +1.0
279,756 - +0.4
279,768 - +1.6
279,786 - -0.9
279,837 + -0.2
279,847 - +0.1
279,853 - -0.5
279,870 - -1.5
279,874 - +0.5
279,874 - -2.2
279,877 + -0.9
279,881 - +1.5
279,892 + -1.0
279,894 + -1.6
279,896 - +1.2
279,904 + -0.7

Or see this region's nucleotide sequence