Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3092

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11459 and 11460 are separated by 614 nucleotides11460 and 11461 are separated by 370 nucleotides mRNA_3091: 11459 - K13303 SGK2 serum/glucocorticoid-regulated kinase 2, at 296,743 to 299,433 11459 mRNA_3092: 11460 - KOG4784 Uncharacterized conserved protein, at 300,048 to 303,992 11460 mRNA_3093: 11461 - Hypothetical Protein, at 304,363 to 305,282 11461

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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299,218 + +2.0
299,324 - -0.5
299,349 - +0.6
299,472 + +0.2
299,478 - -2.0
299,512 + -0.4
299,627 - -1.1
299,627 - +2.3
299,627 - +0.6
299,633 + +0.7
299,637 - -3.0
299,638 - +1.4
299,638 + +0.6
299,644 + -0.7
299,644 - -1.6
299,648 + -2.5
299,656 - -0.4
299,656 - -2.0
299,783 + -0.2
299,797 + -0.0
299,906 - -2.6
299,974 + +1.0
300,098 - -0.0
300,099 + +0.9
300,110 + +0.5
300,223 - +0.3
300,228 - -0.1
300,246 + -1.0
300,251 + +0.8
300,349 + -2.5
300,531 + 11460 mRNA_3092 0.12 +1.1
300,662 + 11460 mRNA_3092 0.16 +1.8
300,680 + 11460 mRNA_3092 0.16 -0.6
300,683 - 11460 mRNA_3092 0.16 +0.4
300,724 + 11460 mRNA_3092 0.17 +0.2
300,843 + 11460 mRNA_3092 0.20 +1.5
300,992 - 11460 mRNA_3092 0.24 +1.5
301,130 - 11460 mRNA_3092 0.27 -1.1
301,136 - 11460 mRNA_3092 0.28 +0.5
301,154 + 11460 mRNA_3092 0.28 -0.3
301,158 + 11460 mRNA_3092 0.28 -0.3
301,326 + 11460 mRNA_3092 0.32 +1.3
301,427 + 11460 mRNA_3092 0.35 +0.9
301,432 - 11460 mRNA_3092 0.35 +0.7
301,433 + 11460 mRNA_3092 0.35 +0.3
301,434 + 11460 mRNA_3092 0.35 -0.4
301,587 - 11460 mRNA_3092 0.39 -0.2
301,597 + 11460 mRNA_3092 0.39 -0.4
301,687 - 11460 mRNA_3092 0.42 -1.8
301,729 - 11460 mRNA_3092 0.43 -0.5
301,864 - 11460 mRNA_3092 0.46 +1.9
302,350 - 11460 mRNA_3092 0.58 +0.9
302,428 + 11460 mRNA_3092 0.60 +2.1
302,600 - 11460 mRNA_3092 0.65 -0.5
302,747 + 11460 mRNA_3092 0.68 +2.2
302,892 + 11460 mRNA_3092 0.72 +0.6
302,902 + 11460 mRNA_3092 0.72 -0.1
303,036 - 11460 mRNA_3092 0.76 +2.1
303,178 - 11460 mRNA_3092 0.79 +1.4
303,285 - 11460 mRNA_3092 0.82 +1.6
303,328 - 11460 mRNA_3092 0.83 -0.3
303,353 + 11460 mRNA_3092 0.84 +0.2
303,449 - 11460 mRNA_3092 0.86 +1.0
303,458 + 11460 mRNA_3092 0.86 +1.1
303,460 + 11460 mRNA_3092 0.86 +0.3
303,477 + 11460 mRNA_3092 0.87 -0.6
303,576 + 11460 mRNA_3092 0.89 -0.2
303,606 - +0.5
303,607 + -0.0
303,610 - +0.9
303,614 - +1.2
303,643 + -1.0
303,744 - +0.0
303,748 - +1.0
303,749 + -1.4
303,760 - -0.3
303,760 + +0.9
303,766 + +0.7
303,891 - +0.9
303,898 - +0.1
304,033 + -0.0
304,038 - +0.7
304,038 + +0.7
304,041 - +0.9
304,045 - +1.6
304,046 + -1.4
304,052 + +0.7
304,054 - +1.3
304,166 - -0.2
304,222 + -1.0
304,371 + +0.4
304,445 + -0.3
304,482 + 11461 mRNA_3093 0.13 -1.4
304,494 + 11461 mRNA_3093 0.14 +0.8
304,599 + 11461 mRNA_3093 0.26 +0.1
304,609 - 11461 mRNA_3093 0.27 -0.9
304,687 - 11461 mRNA_3093 0.35 +1.5
304,695 + 11461 mRNA_3093 0.36 -0.8
304,753 + 11461 mRNA_3093 0.42 +0.2
304,926 - 11461 mRNA_3093 0.61 +0.8
304,959 + 11461 mRNA_3093 0.65 +0.3

Or see this region's nucleotide sequence