Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3107

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11474 and 11475 are separated by 396 nucleotides11475 and 11476 are separated by 111 nucleotides mRNA_3106: 11474 - BLAST potential peroxisomal matrix Pex8 protein [Pseudo..., at 336,211 to 338,758 11474 mRNA_3107: 11475 - K11412 SIRT2, SIR2L2 NAD-dependent deacetylase sirtuin 2, at 339,155 to 340,730 11475 mRNA_3108: 11476 - KOG2203 GTP-binding protein, at 340,842 to 344,399 11476

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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338,269 + 11474 mRNA_3106 0.81 +0.0
338,282 - 11474 mRNA_3106 0.81 -2.2
338,289 + 11474 mRNA_3106 0.82 -0.4
338,382 - 11474 mRNA_3106 0.85 -1.3
338,568 - +0.1
338,572 - +0.1
338,691 - +1.0
338,702 - -0.3
338,704 + +2.4
338,729 + -1.0
338,811 + -0.3
338,850 - +0.4
339,011 + +0.2
339,016 - -1.4
339,021 - +1.2
339,152 - -1.9
339,300 + -0.4
339,310 + -0.3
339,565 - 11475 mRNA_3107 0.26 +0.0
339,885 - 11475 mRNA_3107 0.46 -1.1
339,899 - 11475 mRNA_3107 0.47 +0.1
340,066 - 11475 mRNA_3107 0.58 -0.6
340,193 - 11475 mRNA_3107 0.66 -0.7
340,195 - 11475 mRNA_3107 0.66 +0.7
340,288 - 11475 mRNA_3107 0.72 +0.8
340,635 + -0.4
340,676 - +0.1
340,790 - -0.0
340,907 - -0.1
341,035 - -0.8
341,059 - +0.6
341,067 + +0.5
341,086 - +0.4
341,250 + 11476 mRNA_3108 0.11 +1.2
341,659 + 11476 mRNA_3108 0.23 -0.5
341,682 + 11476 mRNA_3108 0.24 +3.0

Or see this region's nucleotide sequence