Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3114

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11481 and 11482 are separated by 449 nucleotides11482 and 11483 are separated by 282 nucleotides mRNA_3113: 11481 - K11361 SPT20, ADA5 transcription factor SPT20, at 352,715 to 353,874 11481 mRNA_3114: 11482 - BLAST c6 zinc finger domain containing protein [Diplodia co..., at 354,324 to 355,899 11482 mRNA_3115: 11483 - Hypothetical Protein, at 356,182 to 356,910 11483

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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353,347 - 11481 mRNA_3113 0.54 +0.3
353,364 + 11481 mRNA_3113 0.56 -2.3
353,502 + 11481 mRNA_3113 0.68 -0.0
353,507 - 11481 mRNA_3113 0.68 +1.1
353,537 - 11481 mRNA_3113 0.71 +0.1
353,604 + 11481 mRNA_3113 0.77 +0.0
353,668 + 11481 mRNA_3113 0.82 +0.1
353,774 - -1.5
353,781 + +0.4
353,783 - +0.2
353,795 - +0.2
353,805 + -0.2
353,967 + -0.3
353,976 + +2.3
354,041 - -1.9
354,076 - +0.6
354,078 - +1.3
354,083 + +1.5
354,087 - +0.8
354,089 + -0.1
354,091 + +0.2
354,094 - +0.0
354,097 + -0.8
354,100 + +0.3
354,101 - -0.6
354,103 + -0.4
354,223 - -0.3
354,248 + +1.3
354,266 + -0.8
354,519 - 11482 mRNA_3114 0.12 -1.8
354,538 + 11482 mRNA_3114 0.14 -2.4
354,557 - 11482 mRNA_3114 0.15 -1.7
354,670 - 11482 mRNA_3114 0.22 +0.2
354,949 + 11482 mRNA_3114 0.40 +1.5
355,112 - 11482 mRNA_3114 0.50 -0.4
355,242 + 11482 mRNA_3114 0.58 +0.0
355,382 + 11482 mRNA_3114 0.67 -0.7
355,531 - 11482 mRNA_3114 0.77 -0.4
355,534 - 11482 mRNA_3114 0.77 +0.6
355,542 - 11482 mRNA_3114 0.77 -1.0
355,547 + 11482 mRNA_3114 0.78 +0.0
355,807 + -1.3
355,826 + +0.1
355,832 + +0.4
355,971 - -0.1
355,978 + +0.5
355,981 + +0.9
355,982 + +0.6
356,010 + +1.4
356,111 - +0.5
356,130 + +0.0
356,131 + -0.2
356,259 - 11483 mRNA_3115 0.11 +0.7
356,262 - 11483 mRNA_3115 0.11 +1.1
356,282 - 11483 mRNA_3115 0.14 +0.4
356,358 - 11483 mRNA_3115 0.24 +1.6
356,415 + 11483 mRNA_3115 0.32 +0.1
356,571 + 11483 mRNA_3115 0.53 +1.0
356,577 + 11483 mRNA_3115 0.54 +0.0
356,579 + 11483 mRNA_3115 0.54 +1.0
356,732 - 11483 mRNA_3115 0.75 +0.9
356,839 - +0.2

Or see this region's nucleotide sequence