Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3119

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11486 and 11487 are separated by 659 nucleotides11487 and 11488 are separated by 332 nucleotides mRNA_3118: 11486 - K01881 PARS, proS prolyl-tRNA synthetase, at 359,416 to 362,125 11486 mRNA_3119: 11487 - BLAST Spindle pole body protein pcp1 [Hypsizygus marmoreus], at 362,785 to 367,104 11487 mRNA_3120: 11488 - BLAST Protein cps3 [Rhizoctonia solani], at 367,437 to 369,368 11488

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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362,107 - -1.1
362,201 - +1.8
362,417 - +0.6
362,461 + -0.7
362,669 - -0.0
362,684 + +1.1
362,753 + +0.0
362,863 + -0.5
362,910 + -0.1
362,970 + +0.7
363,030 + -0.9
363,349 + 11487 mRNA_3119 0.13 +1.8
363,462 + 11487 mRNA_3119 0.16 -0.6
363,847 - 11487 mRNA_3119 0.25 -0.4
363,963 - 11487 mRNA_3119 0.27 +0.3
364,104 + 11487 mRNA_3119 0.31 +1.5
364,143 - 11487 mRNA_3119 0.31 +0.2
364,194 - 11487 mRNA_3119 0.33 -0.6
364,378 - 11487 mRNA_3119 0.37 +1.0
364,385 + 11487 mRNA_3119 0.37 +0.2
364,469 - 11487 mRNA_3119 0.39 +1.4
364,518 - 11487 mRNA_3119 0.40 +0.3
364,560 + 11487 mRNA_3119 0.41 -0.0
364,814 - 11487 mRNA_3119 0.47 -1.3
364,932 - 11487 mRNA_3119 0.50 -1.2
364,954 + 11487 mRNA_3119 0.50 +0.1
365,154 - 11487 mRNA_3119 0.55 -1.1
365,243 + 11487 mRNA_3119 0.57 +0.6
365,259 - 11487 mRNA_3119 0.57 -0.1
365,390 - 11487 mRNA_3119 0.60 -0.8
365,424 - 11487 mRNA_3119 0.61 +0.5
365,447 - 11487 mRNA_3119 0.62 +0.2
365,637 - 11487 mRNA_3119 0.66 -0.6
366,070 + 11487 mRNA_3119 0.76 -1.3
366,222 - 11487 mRNA_3119 0.80 -0.3
366,307 + 11487 mRNA_3119 0.82 -0.1
366,416 - 11487 mRNA_3119 0.84 +1.3
366,560 + 11487 mRNA_3119 0.87 +1.0
366,566 + 11487 mRNA_3119 0.88 -0.3
366,729 + +0.3
366,856 + +2.0
366,994 - -0.8
366,995 - -1.0
367,159 + +1.0
367,164 + +0.3
367,165 + +0.8
367,167 + +0.8
367,198 - +0.2
367,201 - +1.4
367,207 + -0.2
367,211 + +1.8
367,317 - +1.5
367,318 + -1.0
367,326 - +1.0
367,329 - +0.2
367,473 - -0.3
367,478 - +0.0
367,501 + +0.9
367,603 - -2.0
367,763 - 11488 mRNA_3120 0.17 +0.4
367,924 - 11488 mRNA_3120 0.25 +0.1
367,933 + 11488 mRNA_3120 0.26 +1.4
367,936 + 11488 mRNA_3120 0.26 -0.5
367,990 - 11488 mRNA_3120 0.29 +1.3
368,006 + 11488 mRNA_3120 0.29 -0.4
368,074 - 11488 mRNA_3120 0.33 -0.1

Or see this region's nucleotide sequence