Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3120

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11487 and 11488 are separated by 332 nucleotides11488 and 11489 are separated by 9 nucleotides11489 and 11490 are separated by 520 nucleotides mRNA_3119: 11487 - BLAST Spindle pole body protein pcp1 [Hypsizygus marmoreus], at 362,785 to 367,104 11487 mRNA_3120: 11488 - BLAST Protein cps3 [Rhizoctonia solani], at 367,437 to 369,368 11488 mRNA_3121: 11489 - KOG1039 Predicted E3 ubiquitin ligase, at 369,378 to 369,678 11489 mRNA_3122: 11490 - K05290 PIGK phosphatidylinositol glycan, class K, at 370,199 to 371,731 11490

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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366,560 + 11487 mRNA_3119 0.87 +1.0
366,566 + 11487 mRNA_3119 0.88 -0.3
366,729 + +0.3
366,856 + +2.0
366,994 - -0.8
366,995 - -1.0
367,159 + +1.0
367,164 + +0.3
367,165 + +0.8
367,167 + +0.8
367,198 - +0.2
367,201 - +1.4
367,207 + -0.2
367,211 + +1.8
367,317 - +1.5
367,318 + -1.0
367,326 - +1.0
367,329 - +0.2
367,473 - -0.3
367,478 - +0.0
367,501 + +0.9
367,603 - -2.0
367,763 - 11488 mRNA_3120 0.17 +0.4
367,924 - 11488 mRNA_3120 0.25 +0.1
367,933 + 11488 mRNA_3120 0.26 +1.4
367,936 + 11488 mRNA_3120 0.26 -0.5
367,990 - 11488 mRNA_3120 0.29 +1.3
368,006 + 11488 mRNA_3120 0.29 -0.4
368,074 - 11488 mRNA_3120 0.33 -0.1
368,208 + 11488 mRNA_3120 0.40 +0.3
368,242 + 11488 mRNA_3120 0.42 -1.7
368,341 + 11488 mRNA_3120 0.47 +0.1
368,502 + 11488 mRNA_3120 0.55 +2.2
368,540 + 11488 mRNA_3120 0.57 +1.9
368,552 + 11488 mRNA_3120 0.58 -0.4
368,665 - 11488 mRNA_3120 0.64 +0.1
368,683 - 11488 mRNA_3120 0.64 -1.3
368,698 + 11488 mRNA_3120 0.65 +0.8
368,809 - 11488 mRNA_3120 0.71 +0.2
368,918 + 11488 mRNA_3120 0.77 -0.4
368,966 + 11488 mRNA_3120 0.79 -0.8
368,967 + 11488 mRNA_3120 0.79 +0.1
368,975 + 11488 mRNA_3120 0.80 -0.9
369,079 + 11488 mRNA_3120 0.85 +1.2
369,090 + 11488 mRNA_3120 0.86 +0.1
369,227 - -0.3
369,231 - +1.2
369,236 - +0.7
369,237 - -0.4
369,239 + -0.0
369,268 - -1.3
369,302 + +0.0
369,370 - -0.3
369,372 - +0.6
369,394 + +0.8
369,402 - +2.7
369,521 - 11489 mRNA_3121 0.48 +0.2
369,635 + 11489 mRNA_3121 0.85 -1.4
369,665 - +0.5
369,705 + +0.5
369,706 - -0.3
369,710 + -0.2
369,828 - +1.3
369,834 - -0.0
369,968 - -2.3
369,972 - -0.4
369,980 + -0.6
369,994 - -1.3
370,120 - -0.4
370,127 + -1.5
370,128 - +1.7
370,140 - -0.3
370,144 - +0.4
370,145 + -0.6
370,145 + -1.9
370,156 - +0.5
370,159 + -1.1
370,281 - -1.9
370,287 - +0.7
370,336 + +1.3

Or see this region's nucleotide sequence