Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3122

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11488 and 11489 are separated by 9 nucleotides11489 and 11490 are separated by 520 nucleotides11490 and 11491 are separated by 122 nucleotides mRNA_3120: 11488 - BLAST Protein cps3 [Rhizoctonia solani], at 367,437 to 369,368 11488 mRNA_3121: 11489 - KOG1039 Predicted E3 ubiquitin ligase, at 369,378 to 369,678 11489 mRNA_3122: 11490 - K05290 PIGK phosphatidylinositol glycan, class K, at 370,199 to 371,731 11490 mRNA_3123: 11491 - HMMPfam-Ribosomal RNA adenine dimethylase-PF00398,SUPERFAMILY--SSF53335, at 371,854 to 373,401 11491

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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369,227 - -0.3
369,231 - +1.2
369,236 - +0.7
369,237 - -0.4
369,239 + -0.0
369,268 - -1.3
369,302 + +0.0
369,370 - -0.3
369,372 - +0.6
369,394 + +0.8
369,402 - +2.7
369,521 - 11489 mRNA_3121 0.48 +0.2
369,635 + 11489 mRNA_3121 0.85 -1.4
369,665 - +0.5
369,705 + +0.5
369,706 - -0.3
369,710 + -0.2
369,828 - +1.3
369,834 - -0.0
369,968 - -2.3
369,972 - -0.4
369,980 + -0.6
369,994 - -1.3
370,120 - -0.4
370,127 + -1.5
370,128 - +1.7
370,140 - -0.3
370,144 - +0.4
370,145 + -0.6
370,145 + -1.9
370,156 - +0.5
370,159 + -1.1
370,281 - -1.9
370,287 - +0.7
370,336 + +1.3
370,392 - 11490 mRNA_3122 0.13 +1.6
370,581 - 11490 mRNA_3122 0.25 -1.8
370,708 - 11490 mRNA_3122 0.33 -0.6
370,714 + 11490 mRNA_3122 0.34 +2.4
370,895 + 11490 mRNA_3122 0.45 -1.2
370,924 - 11490 mRNA_3122 0.47 +0.3
371,004 - 11490 mRNA_3122 0.53 +1.5
371,042 + 11490 mRNA_3122 0.55 -0.4
371,044 + 11490 mRNA_3122 0.55 +0.6
371,170 - 11490 mRNA_3122 0.63 +0.3
371,203 - 11490 mRNA_3122 0.65 -0.4
371,315 - 11490 mRNA_3122 0.73 +0.0
371,518 - 11490 mRNA_3122 0.86 -0.8
371,629 - -0.2
371,640 + -0.2
371,640 + +0.4
371,774 + -1.9
371,774 - +0.6
371,775 - +0.3
371,776 - +0.5
371,785 + +1.1
371,786 - +0.1
371,795 + -0.0
371,803 + +0.8
371,804 + +0.2
371,806 + -0.5
371,814 - +0.1
371,817 + -0.3
371,917 + +1.4
371,931 + +0.1
371,934 + +0.3
371,947 + -0.5
371,953 - -1.9
371,954 - +0.1
371,957 + -1.3
372,078 - 11491 mRNA_3123 0.14 +1.8
372,079 - 11491 mRNA_3123 0.15 -2.0
372,080 + 11491 mRNA_3123 0.15 +0.6
372,081 - 11491 mRNA_3123 0.15 -0.1
372,089 - 11491 mRNA_3123 0.15 -0.9
372,105 - 11491 mRNA_3123 0.16 +1.6
372,116 + 11491 mRNA_3123 0.17 +0.5
372,222 + 11491 mRNA_3123 0.24 +1.7
372,244 + 11491 mRNA_3123 0.25 -1.2
372,247 + 11491 mRNA_3123 0.25 -0.0
372,513 - 11491 mRNA_3123 0.43 +0.4
372,516 + 11491 mRNA_3123 0.43 +0.6
372,522 + 11491 mRNA_3123 0.43 -0.4
372,538 + 11491 mRNA_3123 0.44 +0.0

Or see this region's nucleotide sequence