Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3124

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11491 and 11492 are separated by 156 nucleotides11492 and 11493 are separated by 536 nucleotides mRNA_3123: 11491 - HMMPfam-Ribosomal RNA adenine dimethylase-PF00398,SUPERFAMILY--SSF53335, at 371,854 to 373,401 11491 mRNA_3124: 11492 - K04079 HSP90A, htpG molecular chaperone HtpG, at 373,558 to 376,751 11492 mRNA_3125: 11493 - K08145 SLC2A8, GLUT8 MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8, at 377,288 to 379,485 11493

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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372,782 - 11491 mRNA_3123 0.60 -0.6
372,782 + 11491 mRNA_3123 0.60 -0.0
372,818 - 11491 mRNA_3123 0.62 +0.0
372,832 - 11491 mRNA_3123 0.63 +0.4
372,940 - 11491 mRNA_3123 0.70 -1.1
372,960 - 11491 mRNA_3123 0.71 -1.1
372,971 - 11491 mRNA_3123 0.72 -0.2
372,976 - 11491 mRNA_3123 0.72 -1.1
373,090 + 11491 mRNA_3123 0.80 +0.7
373,098 + 11491 mRNA_3123 0.80 +0.0
373,114 - 11491 mRNA_3123 0.81 +1.1
373,245 - 11491 mRNA_3123 0.90 -0.6
373,336 + +1.0
373,391 + +0.1
373,393 + -0.5
373,547 - -0.4
373,652 - +1.9
373,654 - +0.1
373,663 + -0.2
373,667 - +0.7
373,669 - -0.2
373,670 - -0.1
373,676 + +0.2
373,684 - -0.2
373,684 - +0.7
373,684 - -0.5
373,688 - +0.2
373,691 + +1.4
373,692 - -0.9
373,700 - -1.1
373,702 + -0.7
373,702 + +2.0
373,704 + -0.9
373,706 + +0.2
373,712 + -0.0
373,718 - -0.4
373,719 + -1.4
373,720 - +0.5
373,805 - -2.8
373,830 - -1.9
373,832 - +0.4
373,833 + +0.3
373,841 + -2.7
373,842 - +0.8
373,845 - -0.4
373,847 + +0.8
373,862 + -1.4
373,872 - -0.6
373,991 - 11492 mRNA_3124 0.14 -0.0
373,994 + 11492 mRNA_3124 0.14 +1.2
374,008 - 11492 mRNA_3124 0.14 +2.3
374,012 + 11492 mRNA_3124 0.14 +0.2
374,018 + 11492 mRNA_3124 0.14 +0.2
374,025 - 11492 mRNA_3124 0.15 +2.3
374,032 - 11492 mRNA_3124 0.15 -2.0
374,176 - 11492 mRNA_3124 0.19 -1.0
374,176 - 11492 mRNA_3124 0.19 -0.1
374,286 + 11492 mRNA_3124 0.23 +1.1
374,331 - 11492 mRNA_3124 0.24 +0.2
374,341 + 11492 mRNA_3124 0.25 +0.7
374,459 + 11492 mRNA_3124 0.28 +0.6
374,463 - 11492 mRNA_3124 0.28 +0.2
374,481 - 11492 mRNA_3124 0.29 +1.0
374,483 + 11492 mRNA_3124 0.29 +0.0
374,489 - 11492 mRNA_3124 0.29 +0.4
374,575 + 11492 mRNA_3124 0.32 -3.0
374,601 - 11492 mRNA_3124 0.33 +1.0
374,714 - 11492 mRNA_3124 0.36 +1.7
374,760 + 11492 mRNA_3124 0.38 -1.7
374,763 - 11492 mRNA_3124 0.38 -2.7
374,853 - 11492 mRNA_3124 0.41 +0.0
375,110 - 11492 mRNA_3124 0.49 +0.8
375,161 - 11492 mRNA_3124 0.50 +0.3
375,239 - 11492 mRNA_3124 0.53 +1.8
375,320 - 11492 mRNA_3124 0.55 -0.6
375,361 + 11492 mRNA_3124 0.56 +1.0
375,429 + 11492 mRNA_3124 0.59 +0.1
375,492 - 11492 mRNA_3124 0.61 -1.6
375,600 - 11492 mRNA_3124 0.64 -0.0
375,803 - 11492 mRNA_3124 0.70 +1.2
375,814 + 11492 mRNA_3124 0.71 -0.6
375,867 + 11492 mRNA_3124 0.72 +0.2
375,999 - 11492 mRNA_3124 0.76 -2.3
376,064 - 11492 mRNA_3124 0.78 +1.1
376,065 + 11492 mRNA_3124 0.78 +0.8
376,122 + 11492 mRNA_3124 0.80 -1.6
376,175 - 11492 mRNA_3124 0.82 -0.7
376,241 - 11492 mRNA_3124 0.84 -0.4
376,262 - 11492 mRNA_3124 0.85 +0.0
376,294 + 11492 mRNA_3124 0.86 +0.3
376,446 - -0.2
376,492 - -2.2
376,597 + -0.1
376,703 + -0.1
376,715 - +0.3
376,737 + -0.4
376,748 + -0.2
376,871 - -0.6
376,878 - +0.3
376,916 - -0.2
376,917 + +1.7
376,922 + -0.8
376,989 - -0.3
377,034 - -0.3
377,035 + -0.5
377,046 - -1.7
377,048 + -0.5
377,181 - -0.2
377,182 - -1.4
377,188 + -0.1

Or see this region's nucleotide sequence