Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3136

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11504 and 11505 are separated by 482 nucleotides mRNA_3136: 11504 - KOG2615 Permease of the major facilitator superfamily, at 401,491 to 407,249 11504 mRNA_3137: 11505 - SUPERFAMILY--SSF48208, at 407,732 to 408,630 11505

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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400,526 + +0.3
400,526 + -0.5
400,526 - +0.7
400,643 + +0.7
400,852 + -1.0
400,855 - -1.4
400,912 + +0.3
400,946 + +1.2
400,964 + +1.2
401,094 - +1.1
401,098 + +0.5
401,215 - +0.3
401,227 - -0.1
401,227 - -1.2
401,235 + +1.5
401,251 + +0.5
401,258 + +1.7
401,259 + +1.3
401,390 - -0.7
401,396 - +2.0
401,503 - -1.7
401,506 - -0.2
401,531 + -0.2
401,669 - -0.6
401,822 - -1.8
401,843 - -0.8
401,972 - +0.1
402,110 - 11504 mRNA_3136 0.11 +1.8
402,551 + 11504 mRNA_3136 0.18 +0.9
402,565 - 11504 mRNA_3136 0.19 -0.6
402,568 - 11504 mRNA_3136 0.19 -0.9
402,724 + 11504 mRNA_3136 0.21 -0.6
402,889 - 11504 mRNA_3136 0.24 -0.5
403,155 - 11504 mRNA_3136 0.29 +2.2
403,181 + 11504 mRNA_3136 0.29 +0.3
403,254 - 11504 mRNA_3136 0.31 +0.1
403,309 + 11504 mRNA_3136 0.32 -0.6
403,435 - 11504 mRNA_3136 0.34 -0.3
403,505 + 11504 mRNA_3136 0.35 +1.0
403,550 - 11504 mRNA_3136 0.36 +0.2
403,554 - 11504 mRNA_3136 0.36 -0.9
403,559 - 11504 mRNA_3136 0.36 +0.7
403,582 - 11504 mRNA_3136 0.36 +0.0
403,589 - 11504 mRNA_3136 0.36 -1.2
403,592 + 11504 mRNA_3136 0.36 +0.9
403,593 + 11504 mRNA_3136 0.36 +1.7
403,601 - 11504 mRNA_3136 0.37 +0.8
403,703 - 11504 mRNA_3136 0.38 -0.7
403,721 + 11504 mRNA_3136 0.39 -0.2
403,723 - 11504 mRNA_3136 0.39 -0.2
403,739 + 11504 mRNA_3136 0.39 +0.3
403,743 - 11504 mRNA_3136 0.39 +0.8
403,743 + 11504 mRNA_3136 0.39 -0.8
403,748 + 11504 mRNA_3136 0.39 -0.1
403,751 - 11504 mRNA_3136 0.39 -0.3
403,752 - 11504 mRNA_3136 0.39 -0.1
403,752 + 11504 mRNA_3136 0.39 +0.5
403,753 + 11504 mRNA_3136 0.39 +2.4
403,755 - 11504 mRNA_3136 0.39 +0.6
403,755 + 11504 mRNA_3136 0.39 -0.9
403,757 - 11504 mRNA_3136 0.39 +0.5
403,880 + 11504 mRNA_3136 0.41 +0.5
403,894 - 11504 mRNA_3136 0.42 -2.2
403,897 + 11504 mRNA_3136 0.42 -0.3
403,898 - 11504 mRNA_3136 0.42 +1.8
404,026 - 11504 mRNA_3136 0.44 +0.7
404,032 + 11504 mRNA_3136 0.44 -0.1
404,037 + 11504 mRNA_3136 0.44 +0.3
404,062 - 11504 mRNA_3136 0.45 +0.3
404,063 + 11504 mRNA_3136 0.45 -0.4
404,064 - 11504 mRNA_3136 0.45 -0.3
404,139 - 11504 mRNA_3136 0.46 -0.2
404,166 - 11504 mRNA_3136 0.46 -0.2
404,183 + 11504 mRNA_3136 0.47 +0.6
404,208 + 11504 mRNA_3136 0.47 +0.5
404,212 - 11504 mRNA_3136 0.47 +0.7
404,367 + 11504 mRNA_3136 0.50 +1.5
404,469 + 11504 mRNA_3136 0.52 -1.2
404,635 - 11504 mRNA_3136 0.55 -1.0
404,682 - 11504 mRNA_3136 0.55 -0.5
404,773 + 11504 mRNA_3136 0.57 +2.5
404,792 - 11504 mRNA_3136 0.57 -0.4
404,799 + 11504 mRNA_3136 0.57 +0.2
404,800 + 11504 mRNA_3136 0.57 +0.7
405,064 + 11504 mRNA_3136 0.62 +0.5
405,214 - 11504 mRNA_3136 0.65 +0.4
405,249 - 11504 mRNA_3136 0.65 +1.8
405,358 + 11504 mRNA_3136 0.67 -0.7
405,377 - 11504 mRNA_3136 0.67 -0.9
405,378 - 11504 mRNA_3136 0.67 -1.0
405,397 - 11504 mRNA_3136 0.68 +0.0
405,421 - 11504 mRNA_3136 0.68 +0.0
405,835 + 11504 mRNA_3136 0.75 -1.4
405,973 + 11504 mRNA_3136 0.78 +1.7
406,088 - 11504 mRNA_3136 0.80 +0.1
406,163 - 11504 mRNA_3136 0.81 -0.0
406,216 + 11504 mRNA_3136 0.82 -0.6
406,255 + 11504 mRNA_3136 0.83 -0.2
406,309 - 11504 mRNA_3136 0.84 -0.2
406,315 - 11504 mRNA_3136 0.84 +0.4
406,397 - 11504 mRNA_3136 0.85 -1.1
406,471 - 11504 mRNA_3136 0.86 +1.6
406,545 - 11504 mRNA_3136 0.88 -1.1
406,717 - -0.6
406,739 - +0.3
406,752 + +1.2
406,758 - -2.0
406,978 - +1.5
406,979 - +0.2
406,981 - -2.5
407,027 - -0.5
407,148 + -2.3
407,294 - +1.0
407,315 + +0.1
407,451 + +1.0
407,529 + -0.5
407,554 - +0.5
407,601 - +0.5
407,652 + +0.4
407,760 + -2.0
407,796 + -0.6
407,807 - -0.9
407,871 + 11505 mRNA_3137 0.15 +0.1
407,875 - 11505 mRNA_3137 0.16 -1.0
407,932 + 11505 mRNA_3137 0.22 +1.1
408,220 - 11505 mRNA_3137 0.54 -0.9

Or see this region's nucleotide sequence