Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3154

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11521 and 11522 are separated by 295 nucleotides mRNA_3153: 11521 - BLAST serine proline rich protein [Moniliophthora rorer..., at 439,382 to 440,661 11521 mRNA_3154: 11522 - K14831 MAK16 protein MAK16, at 440,957 to 442,475 11522

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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440,096 + 11521 mRNA_3153 0.56 -0.7
440,332 - 11521 mRNA_3153 0.74 -2.2
440,340 + 11521 mRNA_3153 0.75 +0.1
440,495 - 11521 mRNA_3153 0.87 -0.7
440,508 + 11521 mRNA_3153 0.88 +0.4
440,639 - +0.5
440,692 + -0.8
440,928 - -0.6
440,945 - +0.2
440,973 - +1.0
441,230 - 11522 mRNA_3154 0.18 +1.9
441,364 + 11522 mRNA_3154 0.27 +1.7
441,385 + 11522 mRNA_3154 0.28 +0.4
441,487 - 11522 mRNA_3154 0.35 -0.1
441,546 - 11522 mRNA_3154 0.39 +0.4
441,926 - 11522 mRNA_3154 0.64 -0.6
441,980 + 11522 mRNA_3154 0.67 -0.9
442,193 - 11522 mRNA_3154 0.81 +0.1
442,202 + 11522 mRNA_3154 0.82 -0.0
442,229 + 11522 mRNA_3154 0.84 -0.7
442,370 - +0.5
442,376 - -0.5
442,521 - +0.6
442,527 + +0.1
442,528 + -1.0
442,543 + +0.3
442,567 + -0.1
442,665 - -1.5
442,665 - +0.2
442,666 + -1.0
442,667 + -0.0
442,667 + -1.2
442,670 + +0.3
442,671 - -0.3
442,674 - +0.2
442,676 - -0.6
442,681 + -1.7
442,689 - -0.3
442,692 - +0.4
442,693 + -0.0
442,695 + -0.3
442,711 + +0.5
442,729 + +1.5
442,807 + -1.1
442,808 + -0.9
442,843 - -2.0
442,850 - +0.5
442,919 - -1.3
442,963 + -0.7
442,970 + -0.0
442,984 - +1.4
442,984 - +0.5
442,995 - -0.8
442,997 - -0.9
442,997 - +0.0
443,002 + +1.0
443,003 - +0.3
443,011 - -1.3
443,015 + +1.5
443,022 + +0.2
443,026 - +1.2
443,030 + -0.4
443,033 - +0.9
443,049 + -0.9
443,051 - +0.3
443,052 - +0.7
443,052 - -1.5
443,054 - -1.3
443,055 + +2.4
443,058 - -1.6
443,058 + +0.6
443,058 + +0.9
443,062 + +2.2
443,064 + -0.6
443,069 - +1.9
443,069 - +0.7
443,073 - +1.7
443,073 - -0.9
443,078 - +1.0
443,083 - -0.9
443,087 - +0.3
443,090 + -0.3
443,090 + +0.6
443,092 - -0.0
443,096 - +1.4
443,096 - -0.5
443,097 + -0.5
443,099 + -0.5
443,102 - +0.2
443,105 + +0.0
443,106 - -1.9
443,108 - -0.2
443,109 + +1.1
443,109 + +1.1
443,112 - -0.8
443,112 - +0.5
443,113 - +2.6
443,114 - -0.4
443,115 - +0.6
443,118 - -0.1
443,120 - +0.3
443,121 + +2.0
443,123 - +0.2
443,125 - -0.1
443,126 - -0.0
443,128 - +0.2
443,129 - +0.8
443,130 + +2.2
443,131 + +0.0
443,135 + -0.4
443,135 - -0.7
443,135 + +0.3
443,136 + +0.8
443,136 - -0.0
443,136 + -2.9
443,138 + +0.7
443,138 - -0.9
443,139 + +0.8
443,143 - -0.4
443,143 + -0.9
443,145 - +0.7
443,150 + +3.3
443,166 + +0.4
443,195 - +0.5
443,200 + +0.4
443,201 + -0.1
443,203 - -0.1
443,206 - -0.4
443,211 - +1.6
443,211 - -0.3
443,211 + +0.2
443,214 + -0.1
443,215 - -2.1
443,220 - +0.3
443,222 - -0.1
443,222 + +0.7
443,222 - -0.2
443,222 + -0.5
443,223 - -2.5
443,228 - +0.5
443,233 - +0.4
443,236 - +1.0
443,236 - +1.0
443,238 + +0.8
443,238 - +1.2
443,240 + +1.9
443,241 + +0.1
443,242 + -0.9
443,245 - -0.6
443,245 - +0.2
443,246 + +0.4
443,247 + +0.8
443,248 + +1.3
443,249 + +2.9
443,251 + -0.8
443,253 + +1.9
443,257 + -0.4
443,257 + -1.1
443,257 + -1.0
443,262 - +1.0
443,264 - +0.2
443,264 + +0.2
443,266 - +0.6
443,268 + +1.0
443,268 + +0.8
443,273 + -0.6
443,282 - -1.4
443,283 + -1.3
443,289 + +0.5
443,297 + -0.3
443,300 - +1.4
443,300 - +1.6
443,367 - +1.5
443,379 + -0.1
443,397 + -1.3
443,408 + -0.7
443,409 + +0.9
443,411 - -1.5
443,414 + +0.3
443,415 - -0.7
443,416 + -0.1
443,416 - -1.6
443,418 + +0.9
443,420 - +0.7
443,420 - +1.1
443,424 - -0.3
443,428 - +1.0
443,430 - +0.1
443,430 - -1.2
443,430 + -1.6
443,436 + +0.3
443,436 + +0.3
443,439 + +0.7
443,470 + +1.8

Or see this region's nucleotide sequence