Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3155

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11523 and 11524 are separated by 619 nucleotides mRNA_3155: 11523 - HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550, at 443,800 to 447,457 11523 mRNA_3156: 11524 - K12662 PRPF4, PRP4 U4/U6 small nuclear ribonucleoprotein PRP4, at 448,077 to 450,028 11524

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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442,807 + -1.1
442,808 + -0.9
442,843 - -2.0
442,850 - +0.5
442,919 - -1.3
442,963 + -0.7
442,970 + -0.0
442,984 - +1.4
442,984 - +0.5
442,995 - -0.8
442,997 - -0.9
442,997 - +0.0
443,002 + +1.0
443,003 - +0.3
443,011 - -1.3
443,015 + +1.5
443,022 + +0.2
443,026 - +1.2
443,030 + -0.4
443,033 - +0.9
443,049 + -0.9
443,051 - +0.3
443,052 - +0.7
443,052 - -1.5
443,054 - -1.3
443,055 + +2.4
443,058 - -1.6
443,058 + +0.6
443,058 + +0.9
443,062 + +2.2
443,064 + -0.6
443,069 - +1.9
443,069 - +0.7
443,073 - +1.7
443,073 - -0.9
443,078 - +1.0
443,083 - -0.9
443,087 - +0.3
443,090 + -0.3
443,090 + +0.6
443,092 - -0.0
443,096 - +1.4
443,096 - -0.5
443,097 + -0.5
443,099 + -0.5
443,102 - +0.2
443,105 + +0.0
443,106 - -1.9
443,108 - -0.2
443,109 + +1.1
443,109 + +1.1
443,112 - -0.8
443,112 - +0.5
443,113 - +2.6
443,114 - -0.4
443,115 - +0.6
443,118 - -0.1
443,120 - +0.3
443,121 + +2.0
443,123 - +0.2
443,125 - -0.1
443,126 - -0.0
443,128 - +0.2
443,129 - +0.8
443,130 + +2.2
443,131 + +0.0
443,135 + -0.4
443,135 - -0.7
443,135 + +0.3
443,136 + +0.8
443,136 - -0.0
443,136 + -2.9
443,138 + +0.7
443,138 - -0.9
443,139 + +0.8
443,143 - -0.4
443,143 + -0.9
443,145 - +0.7
443,150 + +3.3
443,166 + +0.4
443,195 - +0.5
443,200 + +0.4
443,201 + -0.1
443,203 - -0.1
443,206 - -0.4
443,211 - +1.6
443,211 - -0.3
443,211 + +0.2
443,214 + -0.1
443,215 - -2.1
443,220 - +0.3
443,222 - -0.1
443,222 + +0.7
443,222 - -0.2
443,222 + -0.5
443,223 - -2.5
443,228 - +0.5
443,233 - +0.4
443,236 - +1.0
443,236 - +1.0
443,238 + +0.8
443,238 - +1.2
443,240 + +1.9
443,241 + +0.1
443,242 + -0.9
443,245 - -0.6
443,245 - +0.2
443,246 + +0.4
443,247 + +0.8
443,248 + +1.3
443,249 + +2.9
443,251 + -0.8
443,253 + +1.9
443,257 + -0.4
443,257 + -1.1
443,257 + -1.0
443,262 - +1.0
443,264 - +0.2
443,264 + +0.2
443,266 - +0.6
443,268 + +1.0
443,268 + +0.8
443,273 + -0.6
443,282 - -1.4
443,283 + -1.3
443,289 + +0.5
443,297 + -0.3
443,300 - +1.4
443,300 - +1.6
443,367 - +1.5
443,379 + -0.1
443,397 + -1.3
443,408 + -0.7
443,409 + +0.9
443,411 - -1.5
443,414 + +0.3
443,415 - -0.7
443,416 + -0.1
443,416 - -1.6
443,418 + +0.9
443,420 - +0.7
443,420 - +1.1
443,424 - -0.3
443,428 - +1.0
443,430 - +0.1
443,430 - -1.2
443,430 + -1.6
443,436 + +0.3
443,436 + +0.3
443,439 + +0.7
443,470 + +1.8
443,559 - +1.7
443,573 - +1.1
443,574 - -0.8
443,574 + -0.6
443,575 + +1.3
443,588 - -1.1
443,592 + +1.0
443,593 + +0.7
443,594 - -0.5
443,594 + -0.5
443,599 + -2.5
443,718 - +0.5
443,718 - +0.1
443,728 - +0.9
443,729 + -1.1
443,733 - +1.6
443,734 + +0.6
443,735 + -1.3
443,739 + +1.0
443,745 + +0.7
443,749 - +1.1
443,750 + +0.3
443,755 + +2.5
443,755 + -0.3
443,760 - +1.1
443,760 - -1.4
443,775 + -0.7
443,881 + +1.3
443,883 + +1.2
443,883 + +0.7
443,883 + +0.3
443,889 - -0.3
443,893 + -0.4
443,895 + +0.2
443,897 + +0.1
443,901 - -0.0
443,901 + -0.1
443,902 + -0.3
443,904 + +1.6
443,910 + +0.2
443,918 - +0.7
444,074 + -0.3
444,168 + 11523 mRNA_3155 0.10 -0.3
444,170 - 11523 mRNA_3155 0.10 +1.4
444,175 - 11523 mRNA_3155 0.10 +1.0
444,176 + 11523 mRNA_3155 0.10 -3.8
444,198 + 11523 mRNA_3155 0.11 -0.1
444,473 + 11523 mRNA_3155 0.18 +0.6
444,480 + 11523 mRNA_3155 0.19 +0.3
444,564 + 11523 mRNA_3155 0.21 +1.4
444,767 + 11523 mRNA_3155 0.26 +1.1
445,122 + 11523 mRNA_3155 0.36 +0.9
445,173 + 11523 mRNA_3155 0.38 -2.4
445,364 + 11523 mRNA_3155 0.43 -0.8
445,402 + 11523 mRNA_3155 0.44 -1.0
445,493 + 11523 mRNA_3155 0.46 -0.9
445,539 + 11523 mRNA_3155 0.48 +0.1
445,624 + 11523 mRNA_3155 0.50 -0.0
445,649 + 11523 mRNA_3155 0.51 -0.2
445,725 - 11523 mRNA_3155 0.53 +0.1
445,767 - 11523 mRNA_3155 0.54 +0.1
445,799 - 11523 mRNA_3155 0.55 -0.3
445,948 + 11523 mRNA_3155 0.59 +0.8
446,124 + 11523 mRNA_3155 0.64 -0.0
446,403 + 11523 mRNA_3155 0.71 +0.3
446,482 + 11523 mRNA_3155 0.73 -0.5
446,954 - 11523 mRNA_3155 0.86 -1.2
446,962 - 11523 mRNA_3155 0.86 +1.5
447,082 - 11523 mRNA_3155 0.90 -0.7
447,257 - +0.4
447,543 + +0.3
447,554 - -0.5
447,555 + -0.7
447,558 + +0.6
447,679 - +0.3
447,838 + +0.7
447,846 - -0.7
447,850 - +0.0
447,854 - -2.5
448,004 + +0.3
448,019 - -2.5
448,140 + +0.4
448,146 - +0.9
448,162 + +0.2
448,165 + -0.3
448,175 + +0.8
448,230 + -0.1
448,286 - 11524 mRNA_3156 0.11 +0.4
448,303 - 11524 mRNA_3156 0.12 +0.5
448,308 - 11524 mRNA_3156 0.12 -0.6
448,436 + 11524 mRNA_3156 0.18 +2.0

Or see this region's nucleotide sequence