Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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12 + -0.3
12 + +0.8
15 + +0.5
16 + -0.4
18 + +1.7
22 + -0.3
25 + +1.0
57 - -1.2
61 - +1.4
62 + +0.6
62 + +0.8
66 + +0.3
72 + -0.3
72 + +1.3
72 + +1.9
75 + +1.6
78 - +1.2
105 + +1.7
110 - -1.9
114 + +0.6
115 + -1.6
118 + -1.7
122 + +1.8
122 - -1.0
124 + +1.4
135 + -0.8
147 + -0.1
157 + +1.2
161 + +0.3
168 + +2.1
174 + -0.1
177 - -1.3
228 + +2.0
247 + +1.2
252 - +1.5
253 - +0.3
255 + +0.2
258 + +0.4
264 - +1.6
269 + -0.2
269 - +1.1
274 + +1.8
275 - +0.5
277 + -1.5
280 + +1.1
280 + +1.2
283 - -2.2
285 - +0.7
287 + +1.9
287 + -2.1
288 + -0.6
292 - +1.6
293 + -1.6
298 + -1.2
305 - +0.3
314 + +1.0
320 + +0.5
368 + -0.1
370 - +0.1
372 + +1.4
382 + +2.3
384 + +0.2
391 + +2.3
391 - +0.6
397 + +1.2
397 - +0.9
402 + -2.7
405 + -0.5
423 - -0.8
430 + +0.7
440 + -0.1
446 + +1.3
470 + -1.2
524 + -0.5
532 + -0.9
545 - +1.2
557 + -0.8
569 + +0.4
570 - -4.4
583 + +0.1
584 + -0.4
603 - -0.0
603 + +1.3
634 - 11537 mRNA_3169 0.11 -0.4
636 + 11537 mRNA_3169 0.11 +0.8
646 + 11537 mRNA_3169 0.12 -0.6
661 + 11537 mRNA_3169 0.13 -0.6
667 + 11537 mRNA_3169 0.14 +0.6
698 + 11537 mRNA_3169 0.17 +1.4
704 - 11537 mRNA_3169 0.18 +0.3
705 - 11537 mRNA_3169 0.18 -0.9
721 - 11537 mRNA_3169 0.19 +0.1
725 + 11537 mRNA_3169 0.20 +1.2
738 - 11537 mRNA_3169 0.21 +1.8
849 + 11537 mRNA_3169 0.32 +1.1
871 + 11537 mRNA_3169 0.34 -2.4
883 + 11537 mRNA_3169 0.35 +1.1
894 + 11537 mRNA_3169 0.37 +2.8
895 + 11537 mRNA_3169 0.37 -0.5
922 + 11537 mRNA_3169 0.39 +0.4
965 - 11537 mRNA_3169 0.44 +1.6
1,012 - 11537 mRNA_3169 0.48 -0.9
1,026 + 11537 mRNA_3169 0.50 -0.5
1,026 + 11537 mRNA_3169 0.50 +0.7
1,105 + 11537 mRNA_3169 0.58 -0.0
1,123 + 11537 mRNA_3169 0.60 +1.1
1,141 + 11537 mRNA_3169 0.61 +0.2
1,142 + 11537 mRNA_3169 0.61 +1.7
1,165 + 11537 mRNA_3169 0.64 +0.1
1,174 - 11537 mRNA_3169 0.65 -0.5
1,174 + 11537 mRNA_3169 0.65 +0.5
1,259 + 11537 mRNA_3169 0.73 +1.1
1,265 + 11537 mRNA_3169 0.74 +0.0
1,268 + 11537 mRNA_3169 0.74 +0.7
1,269 - 11537 mRNA_3169 0.74 -0.3
1,288 - 11537 mRNA_3169 0.76 +0.4
1,297 + 11537 mRNA_3169 0.77 +1.6
1,303 - 11537 mRNA_3169 0.78 -0.9
1,399 + 11537 mRNA_3169 0.87 +0.1
1,412 - 11537 mRNA_3169 0.88 -0.2
1,419 - 11537 mRNA_3169 0.89 +1.2
1,423 - 11537 mRNA_3169 0.90 -3.7
1,429 - +0.7
1,453 + +1.1
1,459 + +0.5
1,459 + -0.2
1,460 - +0.6
1,461 + -0.3
1,462 + +0.6
1,467 + -2.0
1,470 - -2.6
1,474 - +0.6
1,485 + -0.4
1,520 + +0.6
1,523 + -1.8
1,531 - -1.6
1,537 + +0.4
1,541 + +0.1
1,562 + -1.2
1,567 + +0.1
1,572 + +1.8
1,582 - -1.4
1,584 - +1.0
1,589 + +0.1
1,596 - -0.8
1,601 - -0.6
1,602 + -0.5
1,605 + -1.0
1,609 + -0.1
1,616 + -0.0
1,636 + +0.2
1,654 + -0.7
1,656 - +1.7
1,666 + +0.2
1,675 - -1.0
1,682 - -0.8
1,697 - -0.4
1,709 + +0.6
1,709 - +0.3
1,711 + +0.3
1,718 - +1.0
1,719 + +0.0
1,722 - -0.1
1,723 + +0.0
1,725 - +0.0
1,725 - +1.0
1,727 + -0.0
1,730 + -1.5
1,731 + -0.2
1,732 + -0.4
1,732 + +0.5
1,734 + +1.7
1,734 + -0.2
1,734 + +0.5
1,739 - -0.6
1,740 + +0.6
1,744 - -1.5
1,747 + -0.6
1,749 + -0.8
1,759 + -0.6
1,759 + -0.6
1,759 + +0.1
1,761 + -0.2
1,763 + -1.0
1,765 + -1.1
1,767 + -1.6
1,769 + +0.0
1,772 + -0.6
1,772 + -0.7
1,774 + -1.9
1,774 + +0.5
1,775 + -1.9
1,776 - +0.8
1,776 + -3.0
1,777 + -1.6
1,778 + +1.2
1,778 - -2.0
1,781 - +0.7
1,783 - -0.4
1,783 - +0.1
1,783 - +0.6
1,783 - -1.6
1,784 + -1.2
1,789 + -0.6
1,789 - -2.2
1,791 + -1.2
1,792 + -0.5
1,793 + +0.3
1,795 + -1.0
1,796 + -1.2
1,796 - -1.4
1,798 + -0.4
1,800 + +0.7
1,801 + -2.0
1,805 + -1.5
1,805 + -2.4
1,807 + -1.2
1,813 - -2.0
1,814 + -0.8
1,814 + -0.9
1,818 - -0.6
1,851 - -3.6
1,874 + -0.5
1,881 - -1.5
1,885 - -1.9
1,891 - -3.3
1,896 - -2.8
1,912 + -1.7
1,912 + -3.4
1,914 - -2.2
1,916 - -2.1
1,917 - -1.7
1,919 + -0.9
1,922 - -2.5
1,923 - -2.2
1,934 - -3.7
1,935 + -4.1
1,938 - -4.6
1,938 - -3.9
1,940 - -2.6
1,941 + -2.4
1,941 + -2.5
1,942 + -2.1
1,943 - -3.7
1,944 + -3.6
1,944 - -3.3
1,945 - -2.2
1,945 + -3.2
1,946 - -5.2
1,947 + -2.2
1,960 - -4.4
1,968 + -0.6
1,980 + -3.8
2,015 + -1.9
2,067 - -4.4
2,081 - -3.4
2,091 + -2.8
2,220 + -4.7
2,229 - -2.6
2,235 - -4.2
2,237 - -4.6
2,242 + -0.2
2,242 - -1.0
2,245 - -2.1
2,248 - -2.4
2,251 + -1.7
2,254 - -4.2
2,261 + -4.1
2,262 - -2.8
2,266 + -1.8
2,268 + -3.0
2,400 + 11538 mRNA_3170 0.21 -3.7
2,401 - 11538 mRNA_3170 0.21 -1.8
2,404 + 11538 mRNA_3170 0.22 -3.5
2,414 + 11538 mRNA_3170 0.23 -1.9
2,420 - 11538 mRNA_3170 0.23 -1.5
2,439 + 11538 mRNA_3170 0.25 -4.2
2,446 + 11538 mRNA_3170 0.26 -1.5
2,470 - 11538 mRNA_3170 0.28 -2.5
2,516 - 11538 mRNA_3170 0.32 -1.6

Or see this region's nucleotide sequence