Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3174

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11541 and 11542 are separated by 481 nucleotides11542 and 11543 are separated by 446 nucleotides mRNA_3173: 11541 - K09497 CCT5 T-complex protein 1 subunit epsilon, at 7,947 to 10,272 11541 mRNA_3174: 11542 - K00953 FLAD1 FAD synthetase, at 10,754 to 11,960 11542 mRNA_3175: 11543 - K01191 E3.2.1.24 alpha-mannosidase, at 12,407 to 17,406 11543

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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10,332 + +1.2
10,621 - -0.4
10,628 + +0.6
10,636 - +1.1
10,640 + +1.0
10,644 + +2.0
10,647 - +0.7
10,656 + +3.0
11,991 + +1.8
12,077 + -0.6
12,411 + +0.3
12,584 + +1.3

Or see this region's nucleotide sequence