Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3210

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11577 and 11578 are separated by 278 nucleotides11578 and 11579 are separated by 159 nucleotides mRNA_3209: 11577 - Hypothetical Protein, at 95,744 to 98,235 11577 mRNA_3210: 11578 - K03512 POLL DNA polymerase lambda, at 98,514 to 102,281 11578 mRNA_3211: 11579 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 102,441 to 104,131 11579

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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97,537 - 11577 mRNA_3209 0.72 -0.7
97,601 + 11577 mRNA_3209 0.75 -0.5
97,603 - 11577 mRNA_3209 0.75 -0.8
97,617 - 11577 mRNA_3209 0.75 -1.5
97,638 - 11577 mRNA_3209 0.76 +0.2
97,774 + 11577 mRNA_3209 0.81 +0.1
97,931 - 11577 mRNA_3209 0.88 +0.4
98,043 - +1.1
98,218 + +0.4
98,298 + -0.9
98,353 + +2.1
98,462 + -0.5
98,532 + -0.3
98,833 - +0.0
98,863 - -1.3
99,078 + 11578 mRNA_3210 0.15 +1.3
99,112 + 11578 mRNA_3210 0.16 -0.5
99,245 + 11578 mRNA_3210 0.19 +0.1
99,261 - 11578 mRNA_3210 0.20 -0.5
99,337 - 11578 mRNA_3210 0.22 +1.0
99,395 + 11578 mRNA_3210 0.23 +0.9
99,847 + 11578 mRNA_3210 0.35 -0.1
99,948 - 11578 mRNA_3210 0.38 -0.1
99,949 + 11578 mRNA_3210 0.38 -0.1
99,981 - 11578 mRNA_3210 0.39 -0.3
99,996 - 11578 mRNA_3210 0.39 -0.3
100,021 - 11578 mRNA_3210 0.40 +0.8
100,257 + 11578 mRNA_3210 0.46 +1.0
100,329 + 11578 mRNA_3210 0.48 +1.3
100,517 - 11578 mRNA_3210 0.53 -0.6
100,753 - 11578 mRNA_3210 0.59 -0.1
101,104 + 11578 mRNA_3210 0.69 -0.8
101,160 + 11578 mRNA_3210 0.70 -0.6
101,161 - 11578 mRNA_3210 0.70 +0.4
101,177 - 11578 mRNA_3210 0.71 -0.8
101,245 + 11578 mRNA_3210 0.72 -0.8
101,348 + 11578 mRNA_3210 0.75 +0.3
101,375 - 11578 mRNA_3210 0.76 -0.7
101,855 - 11578 mRNA_3210 0.89 -1.1
101,872 - 11578 mRNA_3210 0.89 +1.1
101,898 + 11578 mRNA_3210 0.90 -1.0
101,944 + -1.5
101,955 + +0.5
102,116 + -0.3
102,222 - -0.4
102,225 + +0.5
102,373 - -0.1
102,389 + -2.1
102,488 + +0.3
102,538 + +0.0
102,706 + 11579 mRNA_3211 0.16 +0.2
102,709 - 11579 mRNA_3211 0.16 -0.3
102,825 + 11579 mRNA_3211 0.23 +0.6
102,957 + 11579 mRNA_3211 0.31 +0.1
103,001 + 11579 mRNA_3211 0.33 +2.2
103,134 - 11579 mRNA_3211 0.41 +0.5
103,218 - 11579 mRNA_3211 0.46 -2.2
103,239 - 11579 mRNA_3211 0.47 +0.6
103,251 - 11579 mRNA_3211 0.48 +0.2

Or see this region's nucleotide sequence