Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3245

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11612 and 11613 are separated by 459 nucleotides mRNA_3244: 11612 - Hypothetical Protein, at 199,306 to 200,606 11612 mRNA_3245: 11613 - HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550,HMMPfam-Protein of unknown function (DUF3295)-PF11702, at 201,066 to 204,037 11613

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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200,108 + 11612 mRNA_3244 0.62 -1.1
200,206 + 11612 mRNA_3244 0.69 -0.2
200,479 + +0.2
200,500 - -0.5
200,515 - +1.0
200,553 - -0.3
200,597 + -1.2
201,006 - -1.5
201,130 - +0.3
202,039 + 11613 mRNA_3245 0.33 +0.8
202,325 + 11613 mRNA_3245 0.42 -1.1
202,630 + 11613 mRNA_3245 0.53 +1.3
202,767 - 11613 mRNA_3245 0.57 +1.5
203,376 - 11613 mRNA_3245 0.78 +1.5
203,509 + 11613 mRNA_3245 0.82 +0.8
203,657 - 11613 mRNA_3245 0.87 +3.6
203,661 + 11613 mRNA_3245 0.87 +1.6
203,790 - +0.4
203,799 - +2.4
203,946 + +2.7
203,947 + +1.1
204,103 - +1.8
204,225 - -1.9
204,225 - -0.2
204,225 - -0.5
204,234 - +0.3
204,235 - -2.1
204,238 + -2.3
204,250 - +1.7
204,251 + -1.2
204,270 + -0.1
204,278 + -0.7
204,280 + -2.9
204,286 - +1.1
204,290 - -1.4
204,291 - -0.4
204,298 + -0.7
204,314 + +0.8
204,335 - +1.2
204,357 - -2.7
204,383 - +0.3
204,393 - +1.8
204,412 + -0.5
204,437 - -0.4
204,443 - -0.6
204,445 + +0.1
204,447 - +1.8
204,448 + +0.2
204,448 - -1.1
204,454 + +1.9
204,454 + -1.4
204,455 - -1.8
204,463 + -0.4
204,468 - -0.4
204,473 + +0.5
204,479 + +0.9
204,484 - +0.4
204,491 - +0.6
204,511 - -0.7
204,528 - -0.6
204,534 - +1.0
204,547 - -1.2
204,557 + -2.2
204,639 + -0.7
204,647 + -0.1
204,652 - +1.0
204,654 + +1.3
204,664 - +0.7
204,665 + -0.2
204,678 + +0.6
204,695 + +0.1
204,699 + -0.1
204,724 - -0.9
204,727 + -0.6
204,801 - +2.7
204,811 + -0.2
204,826 + -2.7
204,957 - -0.7

Or see this region's nucleotide sequence