Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3261

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11628 and 11629 are separated by 976 nucleotides11629 and 11630 are separated by 349 nucleotides mRNA_3260: 11628 - HMMPfam-Eukaryotic mitochondrial regulator protein-PF12298, at 236,332 to 237,668 11628 mRNA_3261: 11629 - K00236 SDHC, SDH3 succinate dehydrogenase (ubiquinone) cytochrome b560 subunit, at 238,645 to 239,483 11629 mRNA_3262: 11630 - SUPERFAMILY--SSF47616, at 239,833 to 240,831 11630

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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237,699 - +0.1
237,703 + +0.1
237,715 - +0.1
237,866 - -0.2
238,185 + +0.3
238,309 - -0.6
238,441 - -1.0
238,451 + +0.9
238,572 - -0.2
238,574 - -0.4
238,577 - +0.1
238,578 - +0.2
238,579 - +0.1
238,580 - -1.3
238,614 - -0.2
239,606 + -0.2
239,608 - -0.6
239,627 + -0.9
239,635 - -1.2
239,768 - +0.1
240,055 - 11630 mRNA_3262 0.22 -0.1

Or see this region's nucleotide sequence