Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3282

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11649 and 11650 are separated by 475 nucleotides11650 and 11651 are separated by 598 nucleotides mRNA_3281: 11649 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 282,571 to 284,691 11649 mRNA_3282: 11650 - KOG0023 Alcohol dehydrogenase, class V, at 285,167 to 286,436 11650 mRNA_3283: 11651 - K20224 IPO9, RANBP9 importin-9, at 287,035 to 291,052 11651

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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284,621 + -0.5
284,733 - +0.5
284,779 - +1.8
284,938 + -0.4
285,041 + -1.8
285,052 + +0.4
285,471 - 11650 mRNA_3282 0.24 +0.1
285,491 - 11650 mRNA_3282 0.26 +0.1
285,608 - 11650 mRNA_3282 0.35 -0.5
285,776 + 11650 mRNA_3282 0.48 +0.1
285,777 + 11650 mRNA_3282 0.48 +0.3
286,119 - 11650 mRNA_3282 0.75 +0.1
286,948 + +0.3
286,962 - -0.0
286,978 + -0.2
286,980 + +0.2
287,260 - -1.0
287,409 - -0.2
287,425 + +2.0

Or see this region's nucleotide sequence