Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3286

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11653 and 11654 are separated by 639 nucleotides11654 and 11655 are separated by 269 nucleotides11655 and 11656 are separated by 189 nucleotides mRNA_3285: 11653 - KOG2069 Golgi transport complex subunit, at 293,945 to 296,560 11653 mRNA_3286: 11654 - Hypothetical Protein, at 297,200 to 297,720 11654 mRNA_3287: 11655 - Hypothetical Protein, at 297,990 to 298,361 11655 mRNA_3288: 11656 - K03240 EIF2B5 translation initiation factor eIF-2B subunit epsilon, at 298,551 to 301,179 11656

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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296,641 - +1.0
296,653 + -0.7
296,671 + +0.4
296,771 + -0.6
297,134 - -0.5
297,394 + 11654 mRNA_3286 0.37 -1.7
297,528 - 11654 mRNA_3286 0.63 -0.1
297,826 - +1.9
297,827 - +1.4
297,829 + -0.1
297,871 + +2.5
297,990 + -2.1
298,138 + 11655 mRNA_3287 0.40 -1.7
298,140 + 11655 mRNA_3287 0.40 -0.6
298,275 + 11655 mRNA_3287 0.77 -0.1
298,428 - -0.9

Or see this region's nucleotide sequence