Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3292

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11659 and 11660 are separated by 584 nucleotides mRNA_3291: 11659 - BLAST expressed protein [Schizophyllum commune H4-8], at 308,905 to 310,428 11659 mRNA_3292: 11660 - KOG1339 Aspartyl protease, at 311,013 to 311,790 11660

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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310,115 + 11659 mRNA_3291 0.79 -1.6
310,116 + 11659 mRNA_3291 0.79 +1.1
310,273 - 11659 mRNA_3291 0.90 +0.4
310,292 - -0.2
310,569 - -0.5
310,578 - -0.6
310,594 - +1.0
310,598 - +1.1
310,629 + +1.1
310,629 - +0.7
310,652 - +0.2
310,654 - +0.3
310,655 + +0.4
310,669 - -0.2
310,677 - +0.5
310,706 - -0.7
310,710 - -1.1
310,710 - +0.2
310,748 + -1.1
310,991 - -0.6
311,141 + 11660 mRNA_3292 0.16 -0.2
311,291 - 11660 mRNA_3292 0.36 +1.2
311,294 - 11660 mRNA_3292 0.36 -0.7
311,300 + 11660 mRNA_3292 0.37 -0.2
311,405 - 11660 mRNA_3292 0.50 +0.4
311,468 - 11660 mRNA_3292 0.58 +0.2
311,574 - 11660 mRNA_3292 0.72 +1.2
311,620 + 11660 mRNA_3292 0.78 +0.0
311,632 - 11660 mRNA_3292 0.80 +1.8
311,648 - 11660 mRNA_3292 0.82 +0.0
311,732 - -0.2
311,740 + -0.3
311,755 - +0.8
311,755 + +0.0
311,759 + +0.1
311,764 - +0.6
311,764 - +0.4
311,765 + -0.2
311,772 + +0.4
311,773 - +1.2
311,774 - +0.3
311,775 - +0.6
311,775 - -0.8
311,777 - -0.5
311,777 + +0.2
311,778 + +0.3
311,781 - -0.9
311,781 - -0.7
311,783 + -0.4
311,894 - +1.3
311,956 + -0.2
312,247 + -0.3
312,259 + +1.4
312,304 - -0.6
312,306 - +2.7
312,308 + +1.0
312,308 + +0.4
312,314 - -0.1
312,314 - -0.3
312,316 - -1.3
312,319 - -2.0
312,321 + -1.8
312,341 + -1.7
312,341 + +0.4
312,345 + -0.0
312,351 + +1.0
312,353 - +0.5
312,354 - +0.2
312,355 - -0.9
312,361 + +0.0
312,381 + +2.0
312,393 - +0.6
312,408 - -0.2
312,428 + +0.7
312,456 - -0.4
312,460 - +1.0
312,474 - +0.4
312,482 - -0.0
312,485 - -0.0
312,490 - -0.5
312,493 - -1.1
312,716 + +0.7
312,716 + -0.4
312,753 + -1.3

Or see this region's nucleotide sequence