Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3297

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11664 and 11665 are separated by 406 nucleotides11665 and 11666 are separated by 394 nucleotides mRNA_3296: 11664 - Interpro PPR repeat family, at 323,054 to 326,094 11664 mRNA_3297: 11665 - K11173 ADHFE1 hydroxyacid-oxoacid transhydrogenase, at 326,501 to 328,972 11665 mRNA_3298: 11666 - Hypothetical Protein, at 329,367 to 333,104 11666

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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325,888 + -3.4
326,148 - -0.4
326,151 - +1.6
326,162 + -0.2
326,163 + +0.8
326,163 - +0.5
326,172 - -0.8
326,176 + +0.4
326,340 - -0.6
326,348 + -0.9
326,357 - -0.2
326,360 + -0.7
326,367 + -1.5
326,367 + -0.9
326,386 + -0.9
326,507 - +1.1
326,647 + -0.3
326,787 + 11665 mRNA_3297 0.12 +0.4
326,945 - 11665 mRNA_3297 0.18 +0.8
326,951 + 11665 mRNA_3297 0.18 +0.7
327,054 + 11665 mRNA_3297 0.22 -0.1
327,233 - 11665 mRNA_3297 0.30 -0.2
327,406 + 11665 mRNA_3297 0.37 -1.3
327,439 + 11665 mRNA_3297 0.38 +0.2
327,534 + 11665 mRNA_3297 0.42 -0.7
327,546 - 11665 mRNA_3297 0.42 +0.8
327,552 + 11665 mRNA_3297 0.43 -0.1
327,654 - 11665 mRNA_3297 0.47 -0.9
328,160 + 11665 mRNA_3297 0.67 +1.3
328,710 + 11665 mRNA_3297 0.89 +0.7
329,419 - -0.7

Or see this region's nucleotide sequence