Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3299

Experiment: YNB Ricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11666 and 11667 are separated by 653 nucleotides11667 and 11668 are separated by 160 nucleotides mRNA_3298: 11666 - Hypothetical Protein, at 329,367 to 333,104 11666 mRNA_3299: 11667 - K19704 PTC1 protein phosphatase PTC1, at 333,758 to 335,633 11667 mRNA_3300: 11668 - HMMPfam-Amidohydrolase-PF13147,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 335,794 to 339,454 11668

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
remove
332,945 + -0.3
333,119 + +0.1
333,290 + -0.7
333,294 + +0.3
333,298 + -0.1
333,309 - -2.3
333,392 - +0.8
333,399 + +0.2
333,591 + +0.2
333,875 + +0.0
333,998 + 11667 mRNA_3299 0.13 +1.8
334,161 - 11667 mRNA_3299 0.21 -0.4
334,161 + 11667 mRNA_3299 0.21 +1.3
334,300 + 11667 mRNA_3299 0.29 +1.9
334,844 - 11667 mRNA_3299 0.58 -0.1
334,844 + 11667 mRNA_3299 0.58 +0.2
334,894 + 11667 mRNA_3299 0.61 +0.3
335,164 - 11667 mRNA_3299 0.75 -0.2
335,184 - 11667 mRNA_3299 0.76 +1.1
335,440 + 11667 mRNA_3299 0.90 +0.8
335,458 - +1.5
335,463 - +1.1
335,607 + -0.6
335,660 - -1.4
335,759 + +2.0
335,775 + +0.5
335,923 - -0.4
335,929 - +0.9
336,044 + -0.0
336,359 + 11668 mRNA_3300 0.15 +0.2
336,359 - 11668 mRNA_3300 0.15 +1.3

Or see this region's nucleotide sequence