Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3302

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_3302: 11670 - K07232 chaC cation transport protein ChaC, at 343,221 to 344,290 11670

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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342,231 + +2.2
342,232 + -1.1
342,268 + -0.6
342,271 + +0.2
342,291 - -0.6
342,310 + +1.2
342,310 + -0.3
342,312 + -0.4
342,328 + +2.1
342,336 - +1.3
342,340 - -0.5
342,384 + -1.9
342,414 + +0.1
342,421 - +0.0
342,423 - -0.1
342,440 - -1.7
342,446 - -0.9
342,463 - -0.1
342,563 + +2.1
342,588 - -0.0
342,704 - +1.8
342,713 + -0.4
342,768 + +1.0
343,017 + -0.6
343,606 - 11670 mRNA_3302 0.36 +2.8
343,633 - 11670 mRNA_3302 0.39 +0.5
344,499 + +2.3

Or see this region's nucleotide sequence