Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3321

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11688 and 11689 are separated by 507 nucleotides mRNA_3320: 11688 - KOG2493 Na+/Pi symporter, at 389,310 to 390,792 11688 mRNA_3321: 11689 - Hypothetical Protein, at 391,300 to 392,689 11689

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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390,434 - 11688 mRNA_3320 0.76 -2.2
390,460 + 11688 mRNA_3320 0.78 +0.9
390,489 + 11688 mRNA_3320 0.80 +0.1
390,634 + 11688 mRNA_3320 0.89 +0.4
390,868 - +1.8
391,158 - -1.3
391,320 - +2.2
391,526 - 11689 mRNA_3321 0.16 -0.5
391,668 - 11689 mRNA_3321 0.26 +0.4
391,789 + 11689 mRNA_3321 0.35 +0.6
392,040 - 11689 mRNA_3321 0.53 +0.7
392,041 + 11689 mRNA_3321 0.53 +1.4
392,241 - 11689 mRNA_3321 0.68 +1.9
392,356 + 11689 mRNA_3321 0.76 -0.0
392,453 + 11689 mRNA_3321 0.83 +0.1
392,473 + 11689 mRNA_3321 0.84 -0.7
392,541 - 11689 mRNA_3321 0.89 +1.0
393,363 - +0.8
393,456 - -0.8
393,459 + +0.4
393,459 + -0.2
393,462 - -0.4
393,629 - -1.1
393,634 + -1.1
393,641 - -0.1

Or see this region's nucleotide sequence