Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3329

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11696 and 11697 are separated by 350 nucleotides11697 and 11698 are separated by 556 nucleotides mRNA_3328: 11696 - BLAST YALIA101S10e03422g1_1 [Yarrowia lipolytica], at 404,411 to 405,058 11696 mRNA_3329: 11697 - Hypothetical Protein, at 405,409 to 406,722 11697 mRNA_3330: 11698 - Hypothetical Protein, at 407,279 to 408,287 11698

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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404,494 + 11696 mRNA_3328 0.13 +2.5
404,498 + 11696 mRNA_3328 0.13 -0.1
405,367 + -0.5
405,503 - +0.7
405,529 + +1.4
405,530 + +0.1
405,956 + 11697 mRNA_3329 0.42 +0.4
406,128 + 11697 mRNA_3329 0.55 +0.5
406,265 + 11697 mRNA_3329 0.65 +0.5
406,532 + 11697 mRNA_3329 0.85 +0.9
407,009 + -0.0
407,121 + +1.4
407,407 - 11698 mRNA_3330 0.13 -1.3
407,465 - 11698 mRNA_3330 0.18 -1.0

Or see this region's nucleotide sequence