Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3339

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11706 and 11707 are separated by 333 nucleotides11707 and 11708 are separated by 243 nucleotides mRNA_3338: 11706 - KOG3525 Subtilisin-like proprotein convertase, at 419,190 to 423,102 11706 mRNA_3339: 11707 - KOG2445 Nuclear pore complex component (sc Seh1), at 423,436 to 425,345 11707 mRNA_3340: 11708 - K20523 SH3YL1 SH3 domain-containing YSC84-like protein 1, at 425,589 to 428,080 11708

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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422,600 + 11706 mRNA_3338 0.87 -1.2
422,794 - -2.0
422,882 - -0.1
422,914 + -0.0
422,972 - -0.2
422,984 - +0.8
423,151 + -0.7
423,178 - -2.4
423,186 + +0.2
423,189 - +0.4
423,415 - -1.6
423,445 - +1.5
423,571 - +0.5
423,591 + -0.9
423,719 + 11707 mRNA_3339 0.15 +0.2
423,744 + 11707 mRNA_3339 0.16 -0.1
424,043 - 11707 mRNA_3339 0.32 +3.4
424,242 + 11707 mRNA_3339 0.42 +0.7
424,400 - 11707 mRNA_3339 0.50 +0.4
424,798 + 11707 mRNA_3339 0.71 -0.0
424,935 - 11707 mRNA_3339 0.78 -1.7
424,944 - 11707 mRNA_3339 0.79 +0.9
424,966 - 11707 mRNA_3339 0.80 -1.2
425,077 + 11707 mRNA_3339 0.86 +2.0
425,121 + 11707 mRNA_3339 0.88 +0.9
425,372 + +2.0
425,378 - +0.8
425,511 + +1.2
425,522 - +1.3
425,565 + +3.4
425,658 - +1.2
425,672 - +1.2
425,675 + -0.5
425,699 + +0.3
425,871 - 11708 mRNA_3340 0.11 -3.1
425,935 - 11708 mRNA_3340 0.14 -0.9
426,075 - 11708 mRNA_3340 0.20 -0.9

Or see this region's nucleotide sequence