Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3383

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11750 and 11751 are separated by 264 nucleotides mRNA_3382: 11750 - HMMPfam-Vaculolar membrane protein-PF12400,PRINTS-Proline rich extensin signature-PR01217, at 546,099 to 548,480 11750 mRNA_3383: 11751 - HMMPfam-BSD domain-PF03909,ProSiteProfiles-BSD domain profile.-PS50858,SMART-domain in transcription factors and synapse-associated proteins-SM00751,SUPERFAMILY--SSF140383, at 548,745 to 549,848 11751

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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547,759 - 11750 mRNA_3382 0.70 +0.0
548,294 - -0.7
548,607 - +1.3
548,632 - +0.2
548,761 + +1.2
548,773 + +1.5
549,240 + 11751 mRNA_3383 0.45 -1.3
549,749 + +0.8
549,785 - -1.5
549,808 - +1.4
550,202 + +0.9
550,220 + +1.5
550,686 - -1.1
550,802 + -0.1
550,805 + +2.3
550,806 - +0.2
550,813 + +2.1
550,824 - +0.6
550,834 + -0.9
550,839 + -0.5

Or see this region's nucleotide sequence