Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3385

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11753 and 11754 are separated by 348 nucleotides mRNA_3385: 11753 - HMMPfam-Gamma interferon inducible lysosomal thiol reductase (GILT)-PF03227, at 554,455 to 555,770 11753 mRNA_3386: 11754 - K05756 ARPC3 actin related protein 2/3 complex, subunit 3, at 556,119 to 557,419 11754

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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553,560 + +0.1
554,046 + +0.2
554,060 + -0.5
554,186 + -0.2
554,333 + -2.4
554,339 - +0.1
554,345 - +0.6
554,345 + +1.1
554,346 + +0.6
554,347 + -0.3
554,351 - +0.5
554,361 + +0.8
554,362 + +1.6
554,369 - +1.0
554,389 - +1.2
554,390 + -0.8
554,400 - -0.3
554,632 - 11753 mRNA_3385 0.13 +0.3
554,644 + 11753 mRNA_3385 0.14 +0.9
554,673 - 11753 mRNA_3385 0.17 +1.3
554,789 - 11753 mRNA_3385 0.25 +0.1
554,793 - 11753 mRNA_3385 0.26 -0.2
554,938 + 11753 mRNA_3385 0.37 +0.9
554,941 - 11753 mRNA_3385 0.37 +0.5
555,086 + 11753 mRNA_3385 0.48 -2.2
555,302 - 11753 mRNA_3385 0.64 -0.0
555,385 + 11753 mRNA_3385 0.71 -0.3
555,632 + 11753 mRNA_3385 0.89 +1.2
555,812 + +1.3
555,813 - +0.3
555,958 - +1.9
555,965 + +0.4
555,967 + +0.8
555,975 + +0.9
555,976 - +1.1
555,989 + +1.0
556,011 - -0.1

Or see this region's nucleotide sequence