Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3393

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11760 and 11761 are separated by 434 nucleotides11761 and 11762 are separated by 106 nucleotides mRNA_3392: 11760 - HMMPfam-Caffeine-induced death protein 2-PF09774, at 570,084 to 570,935 11760 mRNA_3393: 11761 - KOG3662 Cell division control protein/predicted DNA repair exonuclease, at 571,370 to 574,049 11761 mRNA_3394: 11762 - HMMPfam-UreF-PF01730, at 574,156 to 575,292 11762

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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570,566 - 11760 mRNA_3392 0.57 -1.0
570,838 + 11760 mRNA_3392 0.88 -0.1
570,845 + 11760 mRNA_3392 0.89 +0.5
570,873 - +0.9
570,874 + +0.8
570,885 - -0.1
570,982 - -0.1
570,990 - +1.8
570,990 - +0.7
570,995 + -0.1
571,109 - -0.3
571,369 + +1.3
571,413 + -0.0
571,417 - +0.7
571,442 - +1.2
571,443 + +1.1
571,601 - -1.6
571,730 + 11761 mRNA_3393 0.13 +0.9
571,901 + 11761 mRNA_3393 0.20 -0.6
572,023 + 11761 mRNA_3393 0.24 +0.1
572,563 - 11761 mRNA_3393 0.45 +0.3
572,600 + 11761 mRNA_3393 0.46 -2.1
572,600 - 11761 mRNA_3393 0.46 -1.1
572,731 - 11761 mRNA_3393 0.51 +2.6
572,868 - 11761 mRNA_3393 0.56 -0.3
572,908 + 11761 mRNA_3393 0.57 +0.1
573,325 + 11761 mRNA_3393 0.73 -0.7
573,325 + 11761 mRNA_3393 0.73 -1.7
573,331 + 11761 mRNA_3393 0.73 -1.8
573,347 + 11761 mRNA_3393 0.74 -3.4
573,455 - 11761 mRNA_3393 0.78 +0.4
573,460 + 11761 mRNA_3393 0.78 -0.8
573,471 - 11761 mRNA_3393 0.78 -2.8
573,888 + -1.2
574,167 + -1.4
574,167 + -1.0
574,232 + +0.1
574,246 + -2.0
574,311 + 11762 mRNA_3394 0.14 -0.7
574,394 + 11762 mRNA_3394 0.21 -0.5
574,462 - 11762 mRNA_3394 0.27 -0.4
574,555 + 11762 mRNA_3394 0.35 +1.0
574,665 + 11762 mRNA_3394 0.45 -0.0
574,723 - 11762 mRNA_3394 0.50 +0.0
574,792 - 11762 mRNA_3394 0.56 +0.2
574,823 + 11762 mRNA_3394 0.59 +0.4
574,826 - 11762 mRNA_3394 0.59 -2.4
574,827 - 11762 mRNA_3394 0.59 -1.5
574,832 + 11762 mRNA_3394 0.59 -0.5
574,898 - 11762 mRNA_3394 0.65 -0.1
574,928 + 11762 mRNA_3394 0.68 -0.2
574,942 + 11762 mRNA_3394 0.69 +0.6

Or see this region's nucleotide sequence