Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3399

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11766 and 11767 are separated by 459 nucleotides11767 and 11768 are separated by 115 nucleotides mRNA_3398: 11766 - Hypothetical Protein, at 580,854 to 581,831 11766 mRNA_3399: 11767 - KOG0733 Nuclear AAA ATPase (VCP subfamily), at 582,291 to 585,718 11767 mRNA_3400: 11768 - KOG3345 Uncharacterized conserved protein, at 585,834 to 587,522 11768

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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581,312 + 11766 mRNA_3398 0.47 -0.1
581,400 + 11766 mRNA_3398 0.56 +1.2
581,407 + 11766 mRNA_3398 0.57 +0.3
581,422 + 11766 mRNA_3398 0.58 +1.5
581,435 - 11766 mRNA_3398 0.59 -0.6
581,524 + 11766 mRNA_3398 0.69 +0.4
581,554 - 11766 mRNA_3398 0.72 +0.7
581,570 + 11766 mRNA_3398 0.73 +2.0
581,721 + 11766 mRNA_3398 0.89 +1.4
581,729 + 11766 mRNA_3398 0.89 +2.1
581,730 + 11766 mRNA_3398 0.90 +1.5
581,851 - +0.0
581,862 + +1.9
581,882 - +0.4
581,889 - -0.1
581,900 + -0.1
581,912 - +0.7
581,956 + +0.5
581,978 + +0.6
581,983 + -0.3
581,985 - +2.8
581,989 - -0.3
581,993 + +1.8
581,994 - +1.0
582,001 + -0.6
582,007 - -1.2
582,014 + +0.1
582,023 - +0.3
582,026 + +0.5
582,032 + +0.5
582,037 - +1.0
582,039 - +1.5
582,113 - -0.8
582,310 + +0.5
582,311 + -0.0
582,312 + +2.1
582,580 + +2.1
582,721 + 11767 mRNA_3399 0.13 -0.5
582,753 - 11767 mRNA_3399 0.13 +0.6
582,921 - 11767 mRNA_3399 0.18 -1.4
582,942 - 11767 mRNA_3399 0.19 -0.7
582,944 + 11767 mRNA_3399 0.19 +2.7
583,018 - 11767 mRNA_3399 0.21 -1.2
583,039 + 11767 mRNA_3399 0.22 +0.8
583,172 + 11767 mRNA_3399 0.26 +0.8
583,332 + 11767 mRNA_3399 0.30 +1.0
583,333 - 11767 mRNA_3399 0.30 +0.4
583,456 - 11767 mRNA_3399 0.34 -0.9
583,457 + 11767 mRNA_3399 0.34 +0.9
583,459 - 11767 mRNA_3399 0.34 +1.9
583,469 + 11767 mRNA_3399 0.34 -0.4
583,469 + 11767 mRNA_3399 0.34 +0.9
583,471 + 11767 mRNA_3399 0.34 +2.1
583,598 - 11767 mRNA_3399 0.38 +1.1
583,633 - 11767 mRNA_3399 0.39 -0.4
583,834 + 11767 mRNA_3399 0.45 +0.7
583,931 + 11767 mRNA_3399 0.48 +2.6
584,071 + 11767 mRNA_3399 0.52 +1.5
584,082 + 11767 mRNA_3399 0.52 -0.3
584,166 + 11767 mRNA_3399 0.55 +0.5
584,195 - 11767 mRNA_3399 0.56 +0.4
584,325 - 11767 mRNA_3399 0.59 -1.3
584,494 - 11767 mRNA_3399 0.64 +1.5
584,498 - 11767 mRNA_3399 0.64 +0.3
584,589 + 11767 mRNA_3399 0.67 -1.6
584,873 - 11767 mRNA_3399 0.75 +0.5
584,957 - 11767 mRNA_3399 0.78 +1.0
585,004 - 11767 mRNA_3399 0.79 +1.7
585,100 + 11767 mRNA_3399 0.82 -2.0
585,100 - 11767 mRNA_3399 0.82 -1.8
585,220 + 11767 mRNA_3399 0.85 -0.7
585,303 - 11767 mRNA_3399 0.88 +0.4
585,320 + 11767 mRNA_3399 0.88 -1.4
585,362 + 11767 mRNA_3399 0.90 -1.0
585,451 + -0.8
585,474 - -1.1
585,514 - -0.5
585,613 - +0.3
585,629 + +0.3
585,638 + +0.9
585,670 + +1.0
585,767 + -0.5
585,777 - +0.2
585,792 - -0.1
585,803 + -0.5
586,039 - 11768 mRNA_3400 0.12 -0.8

Or see this region's nucleotide sequence