Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3449

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11816 and 11817 are separated by 82 nucleotides11817 and 11818 are separated by 762 nucleotides mRNA_3448: 11816 - HMMPfam-Peptidase M50B-like-PF13398, at 125,268 to 126,548 11816 mRNA_3449: 11817 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 126,631 to 128,651 11817 mRNA_3450: 11818 - K20131 RABGEF1 Rab5 GDP/GTP exchange factor, at 129,414 to 132,360 11818

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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125,826 - 11816 mRNA_3448 0.44 +0.2
125,970 + 11816 mRNA_3448 0.55 +0.3
126,546 - -0.7
126,552 + +0.3
126,675 - -0.3
126,796 + +0.8
127,370 - 11817 mRNA_3449 0.37 -2.0
128,709 - +1.2
128,735 - -0.2
128,746 + -0.5
128,748 - +0.9
128,870 + -3.0
128,887 - +0.4
128,898 - -0.1
128,905 - +0.1
128,977 - +0.8
129,190 + -0.5
129,223 - +0.8
129,231 - -1.8
129,513 - -0.2

Or see this region's nucleotide sequence