Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3458

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11825 and 11826 are separated by 117 nucleotides11826 and 11827 are separated by 158 nucleotides mRNA_3457: 11825 - KOG1843 Uncharacterized conserved protein, at 144,074 to 145,634 11825 mRNA_3458: 11826 - K03857 PIGA, GPI3 phosphatidylinositol glycan, class A, at 145,752 to 147,635 11826 mRNA_3459: 11827 - ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 147,794 to 151,467 11827

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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144,929 - 11825 mRNA_3457 0.55 +1.2
145,829 - -2.1
147,702 + +0.7
148,004 - -1.8
148,011 + +2.0
148,011 + -0.1
148,011 + -1.5
148,129 - -0.2
148,418 - 11827 mRNA_3459 0.17 -1.7
148,468 - 11827 mRNA_3459 0.18 +0.8
148,544 - 11827 mRNA_3459 0.20 +0.2
148,610 - 11827 mRNA_3459 0.22 +0.8
148,627 - 11827 mRNA_3459 0.23 -0.1

Or see this region's nucleotide sequence