Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3466

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11833 and 11834 are separated by 219 nucleotides mRNA_3465: 11833 - KOG1176 Acyl-CoA synthetase, at 166,819 to 169,091 11833 mRNA_3466: 11834 - HMMPfam-Sds3-like-PF08598, at 169,311 to 170,947 11834

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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168,413 + 11833 mRNA_3465 0.70 -0.1
168,547 + 11833 mRNA_3465 0.76 +1.7
168,683 - 11833 mRNA_3465 0.82 +2.8
168,725 + 11833 mRNA_3465 0.84 -0.2
168,853 + 11833 mRNA_3465 0.89 -0.0
168,861 - 11833 mRNA_3465 0.90 +0.7
168,997 - +0.6
169,000 + +1.0
169,011 - +0.4
169,033 + +1.3
169,039 - +0.5
169,146 - +0.5
169,149 - +1.9
169,153 - -0.2
169,163 + +0.5
169,174 - +1.2
169,179 + +0.1
169,179 + +0.8
169,202 + -0.1
169,208 + +1.3
169,216 - -0.7
169,218 + +0.2
169,253 + +1.1
169,506 - 11834 mRNA_3466 0.12 +0.1
169,543 + 11834 mRNA_3466 0.14 -2.4
169,787 + 11834 mRNA_3466 0.29 -0.2
169,811 - 11834 mRNA_3466 0.31 +0.0
169,940 - 11834 mRNA_3466 0.38 +0.6
170,028 - 11834 mRNA_3466 0.44 +1.6
170,219 + 11834 mRNA_3466 0.55 -0.3
170,275 - 11834 mRNA_3466 0.59 -0.1
170,396 + 11834 mRNA_3466 0.66 -0.9

Or see this region's nucleotide sequence