Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3475

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11842 and 11843 are separated by 418 nucleotides11843 and 11844 are separated by 409 nucleotides mRNA_3474: 11842 - HMMPfam-Protein of unknown function (DUF667)-PF05018, at 196,637 to 197,393 11842 mRNA_3475: 11843 - Hypothetical Protein, at 197,812 to 198,060 11843 mRNA_3476: 11844 - K01915 glnA, GLUL glutamine synthetase, at 198,470 to 200,585 11844

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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196,991 - 11842 mRNA_3474 0.47 +0.2
197,204 + 11842 mRNA_3474 0.75 -0.8
197,326 - +2.7
197,750 + -1.0

Or see this region's nucleotide sequence