Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3478

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11845 and 11846 are separated by 394 nucleotides11846 and 11847 are separated by 160 nucleotides mRNA_3477: 11845 - K07088 K07088 uncharacterized protein, at 201,579 to 204,327 11845 mRNA_3478: 11846 - SUPERFAMILY--SSF56112, at 204,722 to 206,830 11846 mRNA_3479: 11847 - SUPERFAMILY--SSF46934, at 206,991 to 209,346 11847

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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203,850 + 11845 mRNA_3477 0.83 -2.3
204,086 + -0.2
204,093 + +0.2
204,275 - +0.3
204,292 + +0.4
204,411 - +0.8
204,562 + -2.5
204,863 - -0.4
205,344 + 11846 mRNA_3478 0.29 +1.5
205,576 + 11846 mRNA_3478 0.40 +0.4
205,685 - 11846 mRNA_3478 0.46 +0.9
205,903 + 11846 mRNA_3478 0.56 +0.2
206,072 + 11846 mRNA_3478 0.64 +0.3
206,076 + 11846 mRNA_3478 0.64 +2.0
206,385 - 11846 mRNA_3478 0.79 -1.1
206,599 + 11846 mRNA_3478 0.89 +0.3
206,601 + 11846 mRNA_3478 0.89 -0.5
206,641 + +1.2
206,774 - +0.5
206,814 - +0.1
206,856 + +2.3
206,896 - -0.4
206,899 - +0.8
206,914 - +0.8
206,915 - +2.8
206,916 + -1.1
206,924 + -0.9
206,939 + +0.3
207,042 - +2.0
207,049 - -0.3
207,052 + +0.8
207,067 + -0.8
207,205 - +0.3
207,358 - 11847 mRNA_3479 0.16 +0.8
207,360 + 11847 mRNA_3479 0.16 -0.4
207,735 - 11847 mRNA_3479 0.32 +0.4
207,762 - 11847 mRNA_3479 0.33 +1.1
207,789 - 11847 mRNA_3479 0.34 +0.6

Or see this region's nucleotide sequence