Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3488

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11855 and 11856 are separated by 484 nucleotides mRNA_3487: 11855 - Hypothetical Protein, at 221,042 to 223,920 11855 mRNA_3488: 11856 - Hypothetical Protein, at 224,405 to 225,242 11856

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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223,425 - 11855 mRNA_3487 0.83 +0.2
223,559 - 11855 mRNA_3487 0.87 +0.5
223,712 + -1.4
224,189 + +0.4
224,585 - 11856 mRNA_3488 0.21 +0.0
224,590 - 11856 mRNA_3488 0.22 -0.4
224,598 + 11856 mRNA_3488 0.23 -0.5
224,654 + 11856 mRNA_3488 0.30 -1.1
224,774 + 11856 mRNA_3488 0.44 +0.2
224,869 - 11856 mRNA_3488 0.55 +0.8
225,354 + +1.0
225,572 - -0.4
225,757 + -2.5
225,774 + +1.6
225,876 + +0.3
226,021 + -1.1
226,035 - -0.4
226,038 - -0.0
226,041 + -1.4
226,150 - -1.3
226,155 - +0.3
226,186 + +0.7

Or see this region's nucleotide sequence