Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3526

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11893 and 11894 are separated by 723 nucleotides11894 and 11895 are separated by 528 nucleotides mRNA_3525: 11893 - K08139 HXT MFS transporter, SP family, sugar-H+ symporter, at 307,662 to 311,002 11893 mRNA_3526: 11894 - K06666 TUP1 glucose repression regulatory protein TUP1, at 311,726 to 314,497 11894 mRNA_3527: 11895 - K08658 RCE1, FACE2 prenyl protein peptidase, at 315,026 to 316,520 11895

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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310,847 - -0.9
310,862 + -0.4
310,863 + +1.2
310,865 + +0.4
310,884 + -0.9
310,884 - +1.5
310,888 - -1.3
310,889 + +2.1
310,892 - -0.8
310,927 + -0.6
311,062 - +0.1
311,203 + +0.0
314,270 - +0.4
314,428 - -1.2
314,429 + +2.4
314,446 - +0.1
314,555 - -2.5
314,564 + +0.8
314,567 - +0.5
314,583 - +0.4
314,590 - +1.8
314,591 + +0.3
314,607 + +1.2
314,684 - -1.6
314,719 - +1.2
314,723 - +0.9
314,724 - -0.1
314,726 - -1.7
314,740 + -0.0
314,745 - +1.5
314,756 + -1.7
314,860 + +1.7
314,863 - -0.4
314,868 - +0.5
314,871 - +1.5
314,877 + -1.2
314,883 + +0.8
314,887 - +1.2
314,894 + +1.2
314,896 + -0.1
314,898 + +1.0
314,920 - -2.4
314,964 - +1.3
314,967 - -0.7
314,967 + +1.6
314,971 - +0.5
314,972 + +1.1
314,995 + +0.3
315,101 - -1.9
315,119 - -4.3
315,121 - -0.8
315,125 - -0.8
315,161 + -1.9
315,294 - 11895 mRNA_3527 0.18 +2.7
315,443 + 11895 mRNA_3527 0.28 -0.6

Or see this region's nucleotide sequence