Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3543

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11910 and 11911 are separated by 209 nucleotides mRNA_3542: 11910 - K01597 MVD, mvaD diphosphomevalonate decarboxylase, at 11,016 to 12,700 11910 mRNA_3543: 11911 - HMMPfam-MAGE family-PF01454, at 12,910 to 14,656 11911

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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12,865 - -0.3
12,884 + -2.9
12,886 - -0.0
14,782 - +0.3
14,819 - -1.9
14,829 - +0.2
15,476 - +0.7
15,635 - -1.4
15,645 + -1.2
15,651 + -0.8

Or see this region's nucleotide sequence