Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3568

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11935 and 11936 are separated by 180 nucleotides11936 and 11937 are separated by 238 nucleotides mRNA_3567: 11935 - KOG1760 Molecular chaperone Prefoldin, subunit 4, at 70,046 to 70,788 11935 mRNA_3568: 11936 - KOG4055 Uncharacterized conserved protein, at 70,969 to 72,030 11936 mRNA_3569: 11937 - BLAST rna recognition domain-containing protein [Colletotri..., at 72,269 to 75,186 11937

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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70,829 - +1.7
70,862 - +0.4
70,974 + -0.3
72,002 + -1.8
72,007 - +1.0
72,231 - +0.8
72,267 - +2.2
72,271 + +0.9
72,390 + +1.2
72,425 + -0.3
72,716 - 11937 mRNA_3569 0.15 +0.2
72,730 - 11937 mRNA_3569 0.16 -2.3
72,821 - 11937 mRNA_3569 0.19 +0.7
72,857 - 11937 mRNA_3569 0.20 +0.5
72,862 + 11937 mRNA_3569 0.20 +0.1
72,928 - 11937 mRNA_3569 0.23 -0.2
73,022 + 11937 mRNA_3569 0.26 +2.5

Or see this region's nucleotide sequence